Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Tellurium has problems resolving variables for SED data descriptions #522

Open
jonrkarr opened this issue Apr 21, 2021 · 0 comments
Open

Comments

@jonrkarr
Copy link

from /L1V3/L1V3_plotting-data-csv.omex in sed-ml.io examples. Same error with /L1V3/L1V3_plotting-data-numl.omex

  File "/home/jonrkarr/Documents/Biosimulators_tellurium/biosimulators_tellurium/core.py", line 59, in exec_sedml_docs_in_combine_archive
    sed_doc_executer_logged_features=(),
  File "/home/jonrkarr/Documents/Biosimulators_utils/biosimulators_utils/combine/exec.py", line 205, in exec_sedml_docs_in_archive
    indent=1)
  File "/home/jonrkarr/Documents/Biosimulators_tellurium/biosimulators_tellurium/core.py", line 142, in exec_sed_doc
    factory.executePython()
  File "/usr/local/lib/python3.7/site-packages/tellurium/sedml/tesedml.py", line 520, in executePython
    exec(compile(code, filename, 'exec'), symbols)
  File "/tmp/te-generated-sedml.py", line 88, in <module>
    __var__varS1 = dataS1
NameError: name 'dataS1' is not defined
@jonrkarr jonrkarr changed the title Tellurium has problems resolving variables for data descriptions Tellurium has problems resolving variables for SED data descriptions Apr 21, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant