Update full-stack image version - aiida v2.6 (aiidalab#801)

* Update full-stack image version - aiida v2.6
* Update test_verdi_status
* Tweak aiidalab_exec fixture
* Ignore some warnings
* use astral-sh/setup-uv@v1

.github/workflows/ci.yml

@@ -13,7 +13,6 @@ concurrency:
 
 env:
     FORCE_COLOR: 1
-    UV_VERSION: 0.3.0
 
 jobs:
 
@@ -45,7 +44,9 @@ jobs:
                   python-version: ${{ matrix.python-version }}
 
             - name: Install uv
-              run: curl --proto '=https' --tlsv1.2 -LsSf https://github.com/astral-sh/uv/releases/download/${{ env.UV_VERSION }}/uv-installer.sh | sh
+              uses: astral-sh/setup-uv@v1
+              with:
+                  version: 0.4.7
 
             - name: Install package
               run: uv pip install --system -e .[dev] aiida-core==${{ matrix.aiida-core-version }}

Dockerfile

@@ -1,6 +1,6 @@
 # syntax=docker/dockerfile:1
-ARG FULL_STACK_VER=2024.1021
-ARG UV_VER=0.2.27
+ARG FULL_STACK_VER=2024.1022
+ARG UV_VER=0.4.7
 ARG QE_VER=7.2
 ARG QE_DIR=/opt/conda/envs/quantum-espresso-${QE_VER}
 

pyproject.toml

@@ -8,12 +8,16 @@ build-backend = "setuptools.build_meta"
 [tool.pytest.ini_options]
 addopts = '--strict-config --strict-markers --durations=30 --durations-min=1 -ra'
 filterwarnings = [
-    'ignore:Object of type .* not in session, .* operation along .* will not proceed:',
+    # This is needed since SQLAlchemy 2.0, see
+    # https://github.com/aiidalab/aiidalab-widgets-base/issues/605
+    'ignore:Object of type.*not in session,.*operation along.*will not proceed:',
     'ignore:Creating AiiDA configuration:UserWarning:',
     'ignore:metadata.*traitlets.traitlets.Unicode object:DeprecationWarning:',
     # For some reason we get this error, see
     # https://github.com/aiidalab/aiidalab-widgets-base/issues/551
     'ignore:Exception ignored in:pytest.PytestUnraisableExceptionWarning:_pytest',
+    # This popped up in spglib 2.5. Since we still try to support spglib v1,
+    "ignore:dict interface.*is deprecated.Use attribute interface:DeprecationWarning:",
 ]
 
 [tool.ruff]

tests_integration/conftest.py

@@ -39,14 +39,14 @@ def execute(command, user=None, workdir=None, **kwargs):
             opts = f"{opts} --workdir={workdir}"
         command = f"exec {opts} aiidalab {command}"
 
-        return docker_compose.execute(command, **kwargs)
+        return docker_compose.execute(command, **kwargs).decode().strip()
 
     return execute
 
 
 @pytest.fixture(scope="session")
 def nb_user(aiidalab_exec):
-    return aiidalab_exec("bash -c 'echo \"${NB_USER}\"'").decode().strip()
+    return aiidalab_exec("bash -c 'echo \"${NB_USER}\"'")
 
 
 @pytest.fixture(scope="session")

tests_integration/test_image.py

@@ -12,16 +12,19 @@ def test_notebook_service_available(notebook_service):
 def test_verdi_status(aiidalab_exec, nb_user):
     # Check the aiida service is running and connected to RabbitMQ
     # The notebook_service fixture is needed to wait for the services to be up
-    output = aiidalab_exec("verdi status", user=nb_user).decode().strip()
-    assert "Connected to RabbitMQ" in output
+    output = aiidalab_exec("verdi status", user=nb_user)
+    for status in ("version", "config", "profile", "storage", "broker", "daemon"):
+        assert f"✔ {status}" in output
+    assert "/home/jovyan/.aiida" in output
     assert "Daemon is running" in output
+    assert "Unable to connect to broker" not in output
 
 
 @pytest.mark.usefixtures("notebook_service")
 def test_pseudos_families_are_installed(aiidalab_exec, nb_user):
     # Check the aiida service is running and connected to RabbitMQ
     # The notebook_service fixture is needed to wait for the services to be up
-    output = aiidalab_exec("aiida-pseudo list", user=nb_user).decode().strip()
+    output = aiidalab_exec("aiida-pseudo list", user=nb_user)
     assert "SSSP" in output
     assert "PseudoDojo" in output