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Update README.md
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rvanguri authored Aug 7, 2017
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Expand Up @@ -44,7 +44,7 @@ To submit an logistic regression job:

## DAG Workflow

![nSides DAG Workflow](dag_workflow_v2.png)
There are 2 DAG workflows, one for DNN and a separate one for logistic regression.

## Script Summary
The scripts in this folder accomplish the following workflow:
Expand All @@ -54,8 +54,8 @@ The scripts in this folder accomplish the following workflow:
* `prepare_data_osg.py` aggregates all reports and outcomes, used for forming model
3. Run the models. The output should be each report and the model score.
* `mlp_dnn_streaming.py` runs the deep neural network multilayer perceptron
* `mlp_shallow_osg.py` runs shallow classifiers including scikit-learn to run AdaBoost, RandomForest and Logistic Regression
4. Evaluate a given model model by calculating propensity score adjusted proportional reporting ratios (PRRs) for each reaction. `eval_model.py`
* `mlp_shallow_osg_lrc.py` runs logistic regression via scikit-learn
4. Evaluate a given model model (DNN, logistic regression) by calculating propensity score adjusted proportional reporting ratios (PRRs) for each reaction. `eval_model.py`

## Example Local Workflow

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6. `mkdir data; cd data; python ../get_data.py; cd ..`
7. `python prepare_data_osg.py --model-number 0`
8. `python mlp_dnn_streaming.py --run-on-cpu --suffix 0`
9. `python mlp_shallow_osg.py --suffix 0`
10. `python eval_model.py --model-type bdt --model-number 0`
11. `python eval_model.py --model-type rfc --model-number 0`
9. `python mlp_shallow_osg_lrc.py --suffix 0`
12. `python eval_model.py --model-type lrc --model-number 0`
13. `python eval_model.py --model-type dnn --model-number 0`
14. `python eval_model.py --model-type nopsm --model-number 0`
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