eerfile

Read electron event representation (EER) files as NumPy arrays in Python.

Installation

eerfile is available on PyPI and can be installed with pip

pip install eerfile

Usage

import eerfile

# render multi-frame micrograph from file and target dose per frame
# dose per frame is in electrons per square angstrom
image = eerfile.render("FoilHole_19622436.eer", dose_per_output_frame=1.0)

# or you can read the entire stack of EER frames
eer_frames = eerfile.read("FoilHole_19622436.eer")

Acknowledgements

This package is a very thin convenience layer on top of tifffile which provides the EER frame decoding logic.