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@bioconda @quadram-institute-bioscience @AMR-Hackathon-2021

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telatin/README.md

Hello! πŸ‘‹

I'm a bioinformatician working on microbial (meta)genomics :DNA:

πŸ€– I like tinkering with nextflow:

πŸ“¦ Some tools are available via Bioconda :

🧬 πŸš€ seqfu ⛰️ bamtocov πŸ–ŒοΈ dadaist2 πŸ› οΈ qax
GitHub Repo stars Fast toolkit for FASTX manipulation and inspection to extract coverage tracks from BAM files to analyze 16s/ITS from reads to R utilities for Qiime2 artifacts

πŸ“– I use GitHub also for training material

πŸ““ microbiome bioinformatics πŸ§” Personal website πŸ’» bash training πŸŽ₯ Companion videos
Some tutorials A small blog Toy files to practice Bash A Youtube channel

I'm using Mastodon

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  1. seqfu2 seqfu2 Public

    πŸš€ seqfu - Sequece Fastx Utilities

    Nim 110 7

  2. covtobed covtobed Public

    β›° covtobed | Convert the coverage track from a BAM file into a BED file

    C++ 43 3

  3. bamtocov bamtocov Public

    πŸ” coverage extraction from BAM/CRAM files, supporting targets πŸ“Š Β 

    Nim 60 6

  4. gan gan Public

    πŸ“œ the Great Automatic Nomenclator β€” The Next Million Names for Archaea and Bacteria

    Python 34 6

  5. learn_bash learn_bash Public

    Toy files and training material to introduce Linux to molecular biologists

    Python 22 4

  6. nextflow-example nextflow-example Public

    A simple DSL2 workflow: tutorial

    Nextflow 25 7