This repository was archived by the owner on Jan 30, 2025. It is now read-only.
v1.2.0
- ADD: Belanger and Husi (2006) dating method (#3).
- ADD: binomial co-occurrence assessment method (similarity between types).
- ADD:
SimilarityMatrix
S4 class to represent a (dis)similarity matrix. - ADD:
plotSpot
method forSimilarityMatrix
object. - ADD:
plotSpot
method forOccurrenceMatrix
object. - ADD:
[
methods for several classes. - FIX:
similarity()
now returns aSimilarityMatrix
object. - FIX:
plotBar()
does not add confidence interval by default. - FIX: add an argument to
seriate()
to pass aBootCA
object (#4). - FIX: add an optional progress bars with
pbapply
in long running functions. - FIX: deprecate useless accessors.
- FiX:
OccurrenceMatrix
now stores the number of times each pair of taxa occurs together in at least one sample.