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@theiagen

Theiagen Genomics

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  1. public_health_bioinformatics public_health_bioinformatics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

    WDL 44 18

  2. public_health_viral_genomics public_health_viral_genomics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2

    WDL 42 17

  3. public_health_bacterial_genomics public_health_bacterial_genomics Public

    WDL 27 14

Repositories

Showing 10 of 35 repositories
  • mycosnp-wdl Public

    A WDL wrapper of CDCGov/mycosnp-nf for Terra.bio

    theiagen/mycosnp-wdl’s past year of commit activity
    WDL 2 Apache-2.0 0 3 2 Updated Jan 30, 2025
  • OHDL-AR-wdl Public

    OHDL_AR Workflow wrapped in WDL

    theiagen/OHDL-AR-wdl’s past year of commit activity
    WDL 0 0 0 0 Updated Jan 30, 2025
  • Mid-Atlantic-SDP4PHB-2025 Public

    Resource for Mid-Atlantic's Software Development Practices for Public Health Bioinformatics 2025 Training Event

    theiagen/Mid-Atlantic-SDP4PHB-2025’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 1 Updated Jan 30, 2025
  • public_health_bioinformatics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

    theiagen/public_health_bioinformatics’s past year of commit activity
    WDL 44 GPL-3.0 18 48 10 Updated Jan 29, 2025
  • utilities Public

    A collection of general utility scripts

    theiagen/utilities’s past year of commit activity
    Shell 1 AGPL-3.0 0 0 0 Updated Jan 10, 2025
  • theiagen_docker_builds Public
    theiagen/theiagen_docker_builds’s past year of commit activity
    Dockerfile 2 0 1 1 Updated Jan 7, 2025
  • tbp-parser Public

    A TBProfiler output parser. Please contact [email protected] or [email protected] with any questions.

    theiagen/tbp-parser’s past year of commit activity
    Python 4 GPL-3.0 0 0 0 Updated Dec 23, 2024
  • HMAS-wdl Public

    A WDL wrapper around HMAS-QC-Pipeline2 for Terra.bio

    theiagen/HMAS-wdl’s past year of commit activity
    WDL 1 0 1 1 Updated Dec 20, 2024
  • RefNAAP-wdl Public

    WDL wrapper around https://github.com/jiangweiyao/RefNAAP

    theiagen/RefNAAP-wdl’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 20, 2024
  • docker-builds Public Forked from StaPH-B/docker-builds

    📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

    theiagen/docker-builds’s past year of commit activity
    Dockerfile 0 GPL-3.0 127 0 0 Updated Dec 13, 2024
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