added more documentation

theislab · Mar 27, 2024 · ea7bb73 · ea7bb73
1 parent 28f2707
commit ea7bb73
Showing 1 changed file with 5 additions and 10 deletions.
diff --git a/notebooks-tutorials/model_inference.ipynb b/notebooks-tutorials/model_inference.ipynb
@@ -14,9 +14,6 @@
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@@ -380,9 +377,6 @@
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@@ -404,7 +398,11 @@
     "# subset gene space only to genes used by the model\n",
     "adata = adata[:, adata.var.feature_name.isin(genes_from_model.feature_name).to_numpy()]\n",
     "# pass the count matrix in csc_matrix to make column slicing efficient\n",
-    "x_streamlined = streamline_count_matrix(csc_matrix(adata.X), adata.var.feature_name, genes_from_model.feature_name)\n",
+    "x_streamlined = streamline_count_matrix(\n",
+    "    csc_matrix(adata.X), \n",
+    "    adata.var.feature_name,  # change this if gene names are stored in different column\n",
+    "    genes_from_model.feature_name\n",
+    ")\n",
     "x_streamlined.shape"
    ]
   },
@@ -535,9 +533,6 @@
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