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theosanderson committed Jan 23, 2025
1 parent f4c8d60 commit b24412d
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2 changes: 2 additions & 0 deletions .github/workflows/python-test.yml
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Expand Up @@ -46,6 +46,7 @@ jobs:
name: tfci-taxonium-chron
path: tfci-taxonium-chron.jsonl.gz
compression-level: 9
overwrite: true
- name: Test with config
run: |
usher_to_taxonium --input tfci.pb --output tfci-taxonium-config.jsonl.gz --metadata tfci.meta.tsv.gz --genbank hu1.gb --columns genbank_accession,country,date,pangolin_lineage --config_json test_config.json --name_internal_nodes
Expand All @@ -54,6 +55,7 @@ jobs:
name: tfci-taxonium-config
path: tfci-taxonium-config.jsonl.gz
compression-level: 9
overwrite: true
- name: Test no genbank, no metadata
run: |
usher_to_taxonium --input tfci.pb --output tfci-bare.jsonl.gz
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