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@@ -3,18 +3,20 @@ Title: Predict with 'tidymodels' Workflows in Databases | |
Version: 0.1.0.9000 | ||
Authors@R: c( | ||
person("Emil", "Hvitfeldt", , "[email protected]", role = c("aut", "cre")), | ||
person(given = "Posit Software, PBC", role = c("cph", "fnd")) | ||
person("Posit Software, PBC", role = c("cph", "fnd")) | ||
) | ||
Description: Turn 'tidymodels' workflows into objects containing the sufficient | ||
sequential equations to perform predictions. These smaller objects allow | ||
for low dependency prediction locally or directly in databases. | ||
Description: Turn 'tidymodels' workflows into objects containing the | ||
sufficient sequential equations to perform predictions. These smaller | ||
objects allow for low dependency prediction locally or directly in | ||
databases. | ||
License: MIT + file LICENSE | ||
URL: https://github.com/tidymodels/orbital | ||
BugReports: https://github.com/tidymodels/orbital/issues | ||
Imports: | ||
cli, | ||
rlang | ||
Suggests: | ||
arrow, | ||
dbplyr, | ||
dplyr, | ||
dtplyr, | ||
|
@@ -23,6 +25,7 @@ Suggests: | |
parsnip, | ||
R6, | ||
recipes, | ||
sparklyr, | ||
testthat (>= 3.0.0), | ||
tidypredict, | ||
workflows | ||
|
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## For sparklyr testing | ||
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testthat_init <- function() { | ||
options(timeout = 3600) | ||
options(sparklyr.connect.timeout = 300) | ||
options(livy.session.start.timeout = 300) | ||
suppressPackageStartupMessages(library(sparklyr)) | ||
suppressPackageStartupMessages(library(dplyr)) | ||
if (using_arrow()) { | ||
suppressPackageStartupMessages(library(arrow)) | ||
} | ||
testthat_addl_libraries() | ||
} | ||
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testthat_spark_connection <- function() { | ||
if(!testthat_spark_connection_open()) { | ||
testthat_init() | ||
tp <- testthat_spark_connection_type() | ||
if(tp == "method") sc <- testthat_method_connection() | ||
if(tp == "databricks") sc <- testthat_shell_connection(method = "databricks") | ||
if(tp == "synapse") sc <- testthat_shell_connection(method = "synapse") | ||
if(tp == "local") sc <- testthat_shell_connection() | ||
if(tp == "livy") sc <- testthat_livy_connection() | ||
} else { | ||
sc <- testthat_spark_connection_object() | ||
} | ||
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sc | ||
} | ||
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testthat_method_connection <- function() { | ||
sc <- spark_connect( | ||
master = using_master_get(), | ||
method = using_method_get() | ||
) | ||
testthat_spark_connection_object(sc) | ||
sc | ||
} | ||
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testthat_shell_connection <- function(method = "shell") { | ||
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connected <- testthat_spark_connection_open() | ||
spark_version <- testthat_spark_env_version() | ||
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if (connected) { | ||
sc <- testthat_spark_connection_object() | ||
connected <- connection_is_open(sc) | ||
} | ||
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if (Sys.getenv("INSTALL_WINUTILS") == "true") { | ||
spark_install_winutils(spark_version) | ||
} | ||
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if (!connected) { | ||
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options(sparklyr.sanitize.column.names.verbose = TRUE) | ||
options(sparklyr.verbose = TRUE) | ||
options(sparklyr.na.omit.verbose = TRUE) | ||
options(sparklyr.na.action.verbose = TRUE) | ||
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config <- spark_config() | ||
config[["sparklyr.shell.driver-memory"]] <- "3G" | ||
config[["sparklyr.apply.env.foo"]] <- "env-test" | ||
config[["spark.sql.warehouse.dir"]] <- get_spark_warehouse_dir() | ||
if (identical(.Platform$OS.type, "windows")) { | ||
# TODO: investigate why there are Windows-specific timezone portability issues | ||
config[["spark.sql.session.timeZone"]] <- "UTC" | ||
} | ||
config$`sparklyr.sdf_collect.persistence_level` <- "NONE" | ||
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packages <- NULL | ||
if (spark_version >= "2.4.0") packages <- "avro" | ||
if (spark_version >= "2.4.2") packages <- c(packages, "delta") | ||
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sc <- spark_connect( | ||
master = "local", | ||
method = method, | ||
version = spark_version, | ||
config = config, | ||
packages = packages | ||
) | ||
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testthat_spark_connection_object(sc) | ||
} | ||
sc | ||
} | ||
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testthat_livy_connection <- function() { | ||
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if(!testthat_spark_connection_open()) { | ||
if (Sys.getenv("INSTALL_WINUTILS") == "true") { | ||
spark_install_winutils(version) | ||
} | ||
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spark_version <- testthat_spark_env_version() | ||
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livy_service_start( | ||
version = using_livy_version(), | ||
spark_version = spark_version | ||
) | ||
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wait_for_svc( | ||
svc_name = "livy", | ||
port = 8998, | ||
timeout_s = 30 | ||
) | ||
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sc <- spark_connect( | ||
master = "http://localhost:8998", | ||
method = "livy", | ||
version = spark_version | ||
) | ||
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testthat_spark_connection_object(sc) | ||
} | ||
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testthat_spark_connection_object() | ||
} | ||
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wait_for_svc <- function(svc_name, port, timeout_s) { | ||
suppressWarnings({ | ||
socket <- NULL | ||
on.exit( | ||
if (!is.null(socket)) { | ||
close(socket) | ||
} | ||
) | ||
for (t in 1:timeout_s) { | ||
try( | ||
socket <- socketConnection( | ||
host = "localhost", port = port, server = FALSE, open = "r+" | ||
), | ||
silent = TRUE | ||
) | ||
if (is.null(socket)) { | ||
sprintf("Waiting for %s socket to be in listening state...", svc_name) | ||
Sys.sleep(1) | ||
} else { | ||
break | ||
} | ||
} | ||
}) | ||
} | ||
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get_spark_warehouse_dir <- function() { | ||
ifelse(.Platform$OS.type == "windows", Sys.getenv("TEMP"), tempfile()) | ||
} | ||
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spark_install_winutils <- function(version) { | ||
hadoop_version <- if (version < "2.0.0") "2.6" else "2.7" | ||
spark_dir <- paste("spark-", version, "-bin-hadoop", hadoop_version, sep = "") | ||
winutils_dir <- file.path(Sys.getenv("LOCALAPPDATA"), "spark", spark_dir, "tmp", "hadoop", "bin", fsep = "\\") | ||
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if (!dir.exists(winutils_dir)) { | ||
message("Installing winutils...") | ||
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dir.create(winutils_dir, recursive = TRUE) | ||
winutils_path <- file.path(winutils_dir, "winutils.exe", fsep = "\\") | ||
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download.file( | ||
"https://github.com/steveloughran/winutils/raw/master/hadoop-2.6.0/bin/winutils.exe", | ||
winutils_path, | ||
mode = "wb" | ||
) | ||
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message("Installed winutils in ", winutils_path) | ||
} | ||
} | ||
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testthat_addl_libraries <- function() { | ||
libs <- Sys.getenv("TEST_SPARKLYR_LIBRARIES", unset = NA) | ||
if(!is.na(libs)) { | ||
sep_libs <- unlist(strsplit(libs, ";")) | ||
invisible( | ||
lapply(sep_libs, function(x) { | ||
c_libs <- trimws(x) | ||
suppressPackageStartupMessages( | ||
library(c_libs, character.only = TRUE) | ||
) | ||
}) | ||
) | ||
} | ||
} |