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fix typo Recommand → Recommend caught by linting. #151

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fix typo Recommand → Recommend caught by linting. #151

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2 changes: 1 addition & 1 deletion README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -92,7 +92,7 @@ We provided a new document for applying **force calling** (or **regenotyping**)
|--retain_work_dir|Enable to retain temporary folder and files.|False|
|--write_old_sigs|Enable to output temporary sig files.|False|
|--report_readid|Enable to report supporting read ids for each SV.|False|
|--max_split_parts|Maximum number of split segments a read may be aligned before it is ignored. All split segments are considered when using -1. (Recommand -1 when applying assembly-based alignment.)|7|
|--max_split_parts|Maximum number of split segments a read may be aligned before it is ignored. All split segments are considered when using -1. (Recommend -1 when applying assembly-based alignment.)|7|
|--min_mapq|Minimum mapping quality value of alignment to be taken into account.|20|
|--min_read_len|Ignores reads that only report alignments with not longer than bp.|500|
|--merge_del_threshold|Maximum distance of deletion signals to be merged.|0|
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2 changes: 1 addition & 1 deletion src/cuteSV/cuteSV_Description.py
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Expand Up @@ -105,7 +105,7 @@ def parseArgs(argv):
GroupSignaturesCollect = parser.add_argument_group('Collection of SV signatures')
GroupSignaturesCollect.add_argument('-p', '--max_split_parts',
help = "Maximum number of split segments a read may be aligned before it is ignored. All split segments are considered when using -1. \
(Recommand -1 when applying assembly-based alignment.)[%(default)s]",
(Recommend -1 when applying assembly-based alignment.)[%(default)s]",
default = 7,
type = int)
GroupSignaturesCollect.add_argument('-q', '--min_mapq',
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