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24 public repositories
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The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modeling.
Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators
Updated
Nov 15, 2024
Python
Template for a repository for building a BioSimulators-compliant command-line interface and Dockerfile for a biosimulation program
Updated
Dec 14, 2021
Python
Utilities for building standardized command-line interfaces for biosimulation software packages
Updated
Oct 15, 2024
Python
AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Updated
Apr 22, 2024
Python
pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container
Updated
Feb 22, 2022
Python
PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Updated
Oct 18, 2024
Python
tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Updated
Oct 10, 2024
Python
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Updated
Feb 23, 2022
Python
Tutorials for BioSimulators
Updated
May 1, 2023
Jupyter Notebook
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Updated
Nov 18, 2024
Python
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Updated
Feb 25, 2022
Python
OpenCOR simulation program via BioSimulators-compliant command-line interface and Docker container
Updated
Jan 3, 2022
Python
GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Updated
Feb 25, 2022
Python
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
Updated
Nov 15, 2024
Python
MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
Updated
Oct 31, 2024
Python
XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
Updated
Feb 28, 2022
Python
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Updated
Feb 23, 2022
Python
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Updated
Dec 14, 2021
Python
Summary of the technical documentation for BioSimulators
Updated
Dec 14, 2021
Python
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