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Bump numpy from 1.18.5 to 1.22.0 in /requirements #98

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Bump numpy from 1.18.5 to 1.22.0 in /requirements #98

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Commits on Jan 16, 2021

  1. Clean up dataset imports

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  2. Optimise __init__ files

    @WolfByttner
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  3. Update plot_prediction with history

    @WolfByttner
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  4. Add inference test

    @WolfByttner
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  5. Remove old set validation code

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  6. Add self.num_past to LSTM

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  7. Add coverage of Traja models

    @WolfByttner
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  8. Move codecov.yml so codecov can see it

    @WolfByttner
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  9. Make codecov cover everything

    @WolfByttner
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  10. Remove dead code

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  11. Remove trainers that are no longer needed

    @WolfByttner
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  12. Add convergence criterion to regression test

    @WolfByttner
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  13. Move trainer validate functionality into separate function

    @WolfByttner
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  14. Propagate loss type to criterion

    @WolfByttner
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  15. Test network utility functions

    @WolfByttner
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  16. Remove dead code

    @WolfByttner
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  17. Reformat code

    @WolfByttner
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  18. Add plot_prediction to docs

    @WolfByttner
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  19. Update documentation with parameter searching

    @WolfByttner
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  20. Add loss tests

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  21. Reuse classifier, regressor in both ae and vae

    @WolfByttner
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Commits on Jan 17, 2021

  1. Merge pull request #39 from traja-team/datagenerator 

    Data generator added
    @JustinShenk
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  2. Rename 'category' to sequence_id

    @WolfByttner
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  3. Update docs with sequence_id

    @WolfByttner
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  4. Update generator

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Commits on Jan 18, 2021

  1. Change sequence_id to sequence_ids in dataset

    @WolfByttner
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Commits on Jan 23, 2021

  1. Add class to TimeseriesDataset init function

    @WolfByttner
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  2. Rename TimeseriesDataset variables

    @WolfByttner
    WolfByttner committed Jan 23, 2021
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  3. Add sample class to dataset output

    @WolfByttner
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Commits on Jan 24, 2021

  1. Add classification test

    @WolfByttner
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  2. Return losses from validate function

    @WolfByttner
    WolfByttner committed Jan 24, 2021
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  3. Fix failing ae/vae tests

    @WolfByttner
    WolfByttner committed Jan 24, 2021
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Commits on Jan 31, 2021

  1. Simplify module test cases

    @WolfByttner
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  2. Rename calculate_flow_angles

    @JustinShenk
    JustinShenk committed Jan 31, 2021
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  3. Bump version

    @JustinShenk
    JustinShenk committed Jan 31, 2021
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  4. Rename calculate_flow_angles

    @JustinShenk
    JustinShenk committed Jan 31, 2021
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Commits on Feb 2, 2021

  1. Adding explicit PyTest version

    @WolfByttner
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  2. Simplify VAE regression test

    @WolfByttner
    WolfByttner committed Feb 2, 2021
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Commits on Feb 3, 2021

  1. Fix plotting error with timestamps

    @JustinShenk
    JustinShenk committed Feb 3, 2021
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  2. Add calc_laterality

    @JustinShenk
    JustinShenk committed Feb 3, 2021
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  3. Bump version

    @JustinShenk
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  4. Merge pull request #55 from traja-team/fix-time-plotting 

    Fix time plotting
    @JustinShenk
    JustinShenk authored Feb 3, 2021
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  5. Merge pull request #51 from traja-team/classification 

    Classification
    @JustinShenk
    JustinShenk authored Feb 3, 2021
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Commits on Feb 6, 2021

  1. Add VAE regression test

    @WolfByttner
    WolfByttner committed Feb 6, 2021
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  2. Reformat code

    @WolfByttner
    WolfByttner committed Feb 6, 2021
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  3. Reformat tests

    @WolfByttner
    WolfByttner committed Feb 6, 2021
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  4. Add loss test

    @WolfByttner
    WolfByttner committed Feb 6, 2021
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  5. Remove dead code

    @WolfByttner
    WolfByttner committed Feb 6, 2021
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  6. Clean up test docstrings

    @WolfByttner
    WolfByttner committed Feb 6, 2021
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  7. Clean up test docstrings

    @WolfByttner
    WolfByttner committed Feb 6, 2021
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Commits on Feb 7, 2021

  1. Fix color_dark plotting

    @JustinShenk
    JustinShenk committed Feb 7, 2021
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  2. Merge

    @JustinShenk
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  3. Merge branch 'master' into merge-master

    @JustinShenk
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  4. Merge pull request #61 from traja-team/merge-master 

    Fix color_dark plotting
    @JustinShenk
    JustinShenk authored Feb 7, 2021
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  5. Remove to_utm and fix geolife import

    @JustinShenk
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  6. Merge branch 'fix-geolife-remove-to-utm'

    @JustinShenk
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  7. Add pedestrian datasets

    @JustinShenk
    JustinShenk committed Feb 7, 2021
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  8. Fix broken path

    @JustinShenk
    JustinShenk committed Feb 7, 2021
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  9. Remove unused import

    @JustinShenk
    JustinShenk committed Feb 7, 2021
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  10. Fix pedestrian imports

    @JustinShenk
    JustinShenk committed Feb 7, 2021
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  11. Fix mpl 3d import, travis test

    @JustinShenk
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  12. add sklearn to docs env

    @JustinShenk
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  13. update doc env

    @JustinShenk
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  14. DOCS: update doc env

    @JustinShenk
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  15. DOCS: update doc env

    @JustinShenk
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  16. DOCS: update doc env

    @JustinShenk
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  17. DOCS: update doc env

    @JustinShenk
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  18. Add geolife module

    @JustinShenk
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  19. Merge pull request #54 from traja-team/feature-add-calc-lat 

    Add calc_laterality and fix plotting error
    @JustinShenk
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  20. DOCS: update doc env

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  21. Merge branch 'master' into docs

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Commits on Feb 8, 2021

  1. fixing accuracy > 1 error

    @MaddyThakker
    MaddyThakker committed Feb 8, 2021
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  2. Change pypi readme foramtting to rst

    @JustinShenk
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  3. resolving GPU errors for classification

    @MaddyThakker
    MaddyThakker committed Feb 8, 2021
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Commits on Feb 9, 2021

  1. linting and docstr update for visualizer

    @Saran-nns
    Saran-nns committed Feb 9, 2021
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  2. Format with black

    @JustinShenk
    JustinShenk committed Feb 9, 2021
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  3. Add flake8 precommit

    @JustinShenk
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  4. removed unused module manifold and irl

    @Saran-nns
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  5. resolve linter merge conflict

    @Saran-nns
    Saran-nns committed Feb 9, 2021
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  6. Update visualizer.py

    @Saran-nns
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Commits on Feb 10, 2021

  1. Update __init__.py

    @Saran-nns
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  2. Update inference.py

    @Saran-nns
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Commits on Feb 13, 2021

  1. Merge branch 'master' into classification

    @WolfByttner
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  2. Remove visualizer until someone writes tests for it

    @WolfByttner
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  3. Merge pull request #56 from traja-team/classification 

    Classification
    @JustinShenk
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  4. Merge pull request #71 from traja-team/linter 

    Linter
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  5. Merge branch 'master' into fortasyn

    @JustinShenk
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  6. Add initial contributing guide

    @WolfByttner
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  7. Merge pull request #66 from traja-team/fortasyn 

    fixing accuracy > 1 error
    @MaddyThakker
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Commits on Feb 14, 2021

  1. added params for validation and testing during training

    @MaddyThakker
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  2. resolving merge conflicts

    Madhav Thakker authored and Madhav Thakker committed Feb 14, 2021
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  3. cleaning up files

    Madhav Thakker authored and Madhav Thakker committed Feb 14, 2021
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  4. cleaning train.py files

    Madhav Thakker authored and Madhav Thakker committed Feb 14, 2021
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Commits on Feb 15, 2021

  1. Requested changes done

    Madhav Thakker authored and Madhav Thakker committed Feb 15, 2021
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Commits on Feb 17, 2021

  1. Add pituitary gland ODE

    @WolfByttner
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  2. Add numba to requirements

    @WolfByttner
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  3. Add docstring to pituitary gland function

    @WolfByttner
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  4. Add pituitary gland distribution function

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  5. Merge branch 'master' into pituitary_gland

    @WolfByttner
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  6. Update contributing.rst 

    fix formatting
    @JustinShenk
    JustinShenk authored Feb 17, 2021
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Commits on Feb 18, 2021

  1. Add brownian motion generator

    @WolfByttner
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  2. Add dt to Brownian

    @WolfByttner
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  3. Add dt documentation to Brownian

    @WolfByttner
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  4. Add latin hypercube pituitary gland sampler

    @WolfByttner
    WolfByttner committed Feb 18, 2021
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Commits on Feb 19, 2021

  1. Discard pituitary gland activation noise

    @WolfByttner
    WolfByttner committed Feb 19, 2021
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Commits on Feb 20, 2021

  1. Remove deal parentheses

    @WolfByttner
    WolfByttner committed Feb 20, 2021
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  2. Speed up brownian motion tests

    @WolfByttner
    WolfByttner committed Feb 20, 2021
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  3. Let the user choose how much to trim from the pituitary gland

    @WolfByttner
    WolfByttner committed Feb 20, 2021
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  4. Add commentary on the rhs equation pituitary_ode

    @WolfByttner
    WolfByttner committed Feb 20, 2021
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  5. Reduce sensitivity of brownian tests

    @WolfByttner
    WolfByttner committed Feb 20, 2021
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  6. Add non-JIT version of pituitary gland for test coverage

    @WolfByttner
    WolfByttner committed Feb 20, 2021
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  7. Ignore numba-compiled line in pytest

    @WolfByttner
    WolfByttner committed Feb 20, 2021
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  8. Speed up JIT (dispatching through function is slow)

    @WolfByttner
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  9. added tests

    Madhav authored and Madhav committed Feb 20, 2021
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  10. Add comment explaining why coverage is suppressed on JIT code

    @WolfByttner
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  11. Merge branch 'master' into contributing

    @WolfByttner
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Commits on Feb 23, 2021

  1. added not validated and not tested tests

    Madhav authored and Madhav committed Feb 23, 2021
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  2. Merge pull request #75 from traja-team/pituitary_gland 

    Add Pituitary gland example function
    @WolfByttner
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Commits on Feb 25, 2021

  1. Merge pull request #72 from traja-team/fortasyn 

    added validation and testing during training
    @MaddyThakker
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  2. Add test and code quality section to contributors guide

    @WolfByttner
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  3. Add intro to contributor's guide

    @WolfByttner
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  4. Improve contributing intro section

    @WolfByttner
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Commits on Mar 7, 2021

  1. Update paper

    @JustinShenk
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  2. Update paper - add refs

    @JustinShenk
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  3. Update paper - add refs

    @JustinShenk
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  4. Update paper - add refs

    @JustinShenk
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Commits on Mar 10, 2021

  1. Update paper, fix formatting

    @JustinShenk
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  2. Update paper, fix formatting

    @JustinShenk
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  3. Update paper, fix formatting

    @JustinShenk
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  4. Update author name

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Commits on Mar 16, 2021

  1. Paper: Update refs

    @JustinShenk
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  2. Paper: Add refs

    @JustinShenk
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Commits on Mar 18, 2021

  1. Fix author name

    @JustinShenk
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Commits on Mar 27, 2021

  1. Continuous pdf creation

    @JustinShenk
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  2. Update refs

    @JustinShenk
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  3. Add hyperlinks to notebooks (that exist)

    @WolfByttner
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  4. [Paper] Remove API doc from paper

    @JustinShenk
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  5. [Paper] Trim paper

    @JustinShenk
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  6. [Paper] Trim paper further, fix links

    @JustinShenk
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  7. [Paper] Fix image width, remove documentation

    @JustinShenk
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Commits on Mar 29, 2021

  1. [Paper] fix refs

    @JustinShenk
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  2. [Paper] Add doi

    @JustinShenk
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Commits on Mar 31, 2021

  1. Added convex_hull property to traja dataframe, currently set to popul… 

    …ate (as array) on generate(convex_hull=True), or by manually setting like df.convex_hull = df[['x', 'y']]. Updated documentation and added test. Also added inside function to determine if point is in polygon, and function to determine colinearity of three points.
    @aleczoeller
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  2. Rebase error removal

    @aleczoeller
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  3. Continued rebase error correction

    @aleczoeller
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Commits on Apr 2, 2021

  1. Corrected error/ommission from test_trajectory.py

    @aleczoeller
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Commits on Apr 3, 2021

  1. Merge pull request #78 from aleczoeller/convex_hull_v1 

    Added functionality to create a convex hull for any trajectory, as an…
    @JustinShenk
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Commits on Apr 5, 2021

  1. [Docs] Update documentation

    @JustinShenk
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Commits on Apr 7, 2021

  1. Merge pull request #73 from traja-team/contributing 

    Add initial contributing guide
    @WolfByttner
    WolfByttner authored Apr 7, 2021
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Commits on May 17, 2021

  1. Update copyright

    @JustinShenk
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  2. Reduce test duration

    @JustinShenk
    JustinShenk committed May 17, 2021
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  3. Fix model presets, formatting

    @JustinShenk
    JustinShenk committed May 17, 2021
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  4. Fix model presets, formatting

    @JustinShenk
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  5. Fix docs

    @JustinShenk
    JustinShenk committed May 17, 2021
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  6. Fix tests

    @JustinShenk
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  7. Initialize with sane defaults

    @JustinShenk
    JustinShenk committed May 17, 2021
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  8. simplify assertions

    @JustinShenk
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  9. add pytorch ref

    @JustinShenk
    JustinShenk committed May 17, 2021
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  10. add temp citation

    @JustinShenk
    JustinShenk committed May 17, 2021
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  11. Update docs, update dev requirements

    @JustinShenk
    JustinShenk committed May 17, 2021
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  12. Update docs, update dev requirements

    @JustinShenk
    JustinShenk committed May 17, 2021
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  13. Remove unused requirements file

    @JustinShenk
    JustinShenk committed May 17, 2021
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Commits on May 18, 2021

  1. Add plot methods

    @JustinShenk
    JustinShenk committed May 18, 2021
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Commits on May 19, 2021

  1. Update docs, paper, plotting

    @JustinShenk
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  2. Update docs, paper, plotting

    @JustinShenk
    JustinShenk committed May 19, 2021
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  3. Update docs, fix warning

    @JustinShenk
    JustinShenk committed May 19, 2021
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  4. Update docs, fix warning

    @JustinShenk
    JustinShenk committed May 19, 2021
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  5. Update paper

    @JustinShenk
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  6. Update paper

    @JustinShenk
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  7. Update docs

    @JustinShenk
    JustinShenk committed May 19, 2021
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  8. Update paper

    @JustinShenk
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  9. Bump version

    @JustinShenk
    JustinShenk committed May 19, 2021
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Commits on May 20, 2021

  1. Update paper

    @JustinShenk
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Commits on May 21, 2021

  1. Merge pull request #86 from traja-team/add-methods 

    Merge
    @JustinShenk
    JustinShenk authored May 21, 2021
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  2. Bump version

    @JustinShenk
    JustinShenk committed May 21, 2021
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  3. Move file

    @JustinShenk
    JustinShenk committed May 21, 2021
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  4. Update citation

    @JustinShenk
    JustinShenk committed May 21, 2021
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  5. Update docs

    @JustinShenk
    JustinShenk committed May 21, 2021
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  6. Merge branch 'add-methods'

    @JustinShenk
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  7. Bump version

    @JustinShenk
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  8. Update docs

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Commits on May 27, 2021

  1. Update paper

    @JustinShenk
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  2. Update paper

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Commits on Jun 2, 2021

  1. Exclude tests

    @JustinShenk
    JustinShenk committed Jun 2, 2021
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  2. Add init for subpackage

    @JustinShenk
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  3. Merge pull request #90 from traja-team/fix-subpackages 

    Fix subpackages
    @JustinShenk
    JustinShenk authored Jun 2, 2021
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  4. Fix wording

    @JustinShenk
    JustinShenk committed Jun 2, 2021
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  5. Move colormap to viridis

    @JustinShenk
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  6. Add animation example

    @JustinShenk
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  7. Add seed to generate, update animate

    @JustinShenk
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Commits on Jun 4, 2021

  1. Fix formatting and typography

    @JustinShenk
    JustinShenk committed Jun 4, 2021
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  2. [Docs] Update plotting and index

    @JustinShenk
    JustinShenk committed Jun 4, 2021
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  3. [Docs] Add support page

    @JustinShenk
    JustinShenk committed Jun 4, 2021
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  4. [Paper] Update paper

    @JustinShenk
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  5. Fix expected output for test

    @JustinShenk
    JustinShenk committed Jun 4, 2021
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  6. [Paper] Add jaguar ref

    @JustinShenk
    JustinShenk committed Jun 4, 2021
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  7. [Docs] Fix animation

    @JustinShenk
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  8. Merge pull request #91 from traja-team/review-update 

    Review update
    @JustinShenk
    JustinShenk authored Jun 4, 2021
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  9. Update README.rst 

    add conda-forge badge
    @JustinShenk
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  10. Update README.rst 

    Add conda-forge badge
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  11. [Docs] Update link

    @JustinShenk
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  12. [Docs] Update link

    @JustinShenk
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  13. [Paper] Fix minor typo, update date

    @JustinShenk
    JustinShenk committed Jun 4, 2021
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  14. Update README.rst

    @JustinShenk
    JustinShenk authored Jun 4, 2021
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  15. Update README.rst

    @JustinShenk
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  16. Update README.rst 

    Revert to match zenodo for consistency
    @JustinShenk
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  17. Update README.rst 

    Make same as CITATION
    @JustinShenk
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  18. Add JOSS badge

    @JustinShenk
    JustinShenk authored Jun 4, 2021
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  19. Update README.rst 

    Fix formatting
    @JustinShenk
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Commits on Jun 24, 2021

  1. [Paper] Add author

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  2. [Paper] Fix minor typos and formatting

    @JustinShenk
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  3. [Paper] Fix figure numbers and clarify text

    @JustinShenk
    JustinShenk committed Jun 24, 2021
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  4. [Paper] Fix footnote numbering

    @JustinShenk
    JustinShenk committed Jun 24, 2021
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Commits on Jun 28, 2021

  1. [Paper] Fix minor typos

    @JustinShenk
    JustinShenk authored Jun 28, 2021
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Commits on Jul 1, 2021

  1. Bump version

    @JustinShenk
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  2. Update README.rst

    @JustinShenk
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  3. Fix link

    @JustinShenk
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Commits on Jul 2, 2021

  1. [Paper] Fix doi

    @JustinShenk
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  2. Bump version

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  3. [Paper] Fix doi

    @JustinShenk
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  4. Bump version

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Commits on Jul 3, 2021

  1. Bump version

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  2. Bump version, fix citation

    @JustinShenk
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Commits on Jul 5, 2021

  1. [Paper] Update ref

    @JustinShenk
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Commits on Jul 9, 2021

  1. Minor additions 

    * Remove duplicate angle method "angles"
* Add options to specify unit and lag in "calc_angle"
* Check angle unit in calc_heading
* Update tests, fix minor typos
* Code formatting and fix flake8 issues
    Jonas Otten committed Jul 9, 2021
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  2. Merge pull request #92 from jootten/minor_changes 

    Minor additions
    @JustinShenk
    JustinShenk authored Jul 9, 2021
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  3. [Tests] Add github action

    @JustinShenk
    JustinShenk committed Jul 9, 2021
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  4. [Tests] Add github action

    @JustinShenk
    JustinShenk committed Jul 9, 2021
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  5. [Tests] Fix github action

    @JustinShenk
    JustinShenk committed Jul 9, 2021
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  6. Fix variable reference, comparisons

    @JustinShenk
    JustinShenk committed Jul 9, 2021
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  7. Fix import

    @JustinShenk
    JustinShenk committed Jul 9, 2021
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  8. Remove unused requirements

    @JustinShenk
    JustinShenk committed Jul 9, 2021
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  9. Fix convex_hull getter

    @JustinShenk
    JustinShenk committed Jul 9, 2021
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Commits on Jul 12, 2021

  1. [Paper] Fix image size

    @JustinShenk
    JustinShenk committed Jul 12, 2021
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  2. Remove unused requirements

    @JustinShenk
    JustinShenk committed Jul 12, 2021
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  3. Remove unused requirements

    @JustinShenk
    JustinShenk committed Jul 12, 2021
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  4. [Tests] Fix lib install

    @JustinShenk
    JustinShenk committed Jul 12, 2021
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Commits on Jul 17, 2021

  1. [Paper] Improve images

    @JustinShenk
    JustinShenk committed Jul 17, 2021
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  2. [Paper] Increase image width

    @JustinShenk
    JustinShenk committed Jul 17, 2021
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  3. Update README.rst

    @JustinShenk
    JustinShenk authored Jul 17, 2021
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Commits on Jul 25, 2021

  1. Update issue templates

    @JustinShenk
    JustinShenk authored Jul 25, 2021
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Commits on Jul 27, 2021

  1. [Tests] increase verbosity

    @JustinShenk
    JustinShenk committed Jul 27, 2021
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  2. [Tests] Skip test

    @JustinShenk
    JustinShenk committed Jul 27, 2021
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Commits on Aug 22, 2021

  1. Remove unused code, update docs

    @JustinShenk
    JustinShenk committed Aug 22, 2021
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Commits on Sep 15, 2021

  1. [Docs] Add link to paper

    @JustinShenk
    JustinShenk committed Sep 15, 2021
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Commits on Nov 21, 2021

  1. Remove redundant reference

    @JustinShenk
    JustinShenk committed Nov 21, 2021
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  2. [Paper] Remove redundant refs

    @JustinShenk
    JustinShenk committed Nov 21, 2021
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Commits on Oct 11, 2022

  1. Fix histogram rotation to keep y as first dimension

    @JustinShenk
    JustinShenk committed Oct 11, 2022
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  2. Merge pull request #101 from traja-team/fix/trip-grid 

    Fix histogram rotation to keep y as first dimension
    @JustinShenk
    JustinShenk authored Oct 11, 2022
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Commits on Apr 5, 2024

  1. Bump numpy from 1.18.5 to 1.22.0 in /requirements 

    Bumps [numpy](https://github.com/numpy/numpy) from 1.18.5 to 1.22.0.
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/HOWTO_RELEASE.rst)
- [Commits](numpy/numpy@v1.18.5...v1.22.0)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
    @dependabot
    dependabot[bot] authored Apr 5, 2024
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