KokkosKernels: match #2353 #13502

cwpearson · 2024-10-03T17:54:33Z

@trilinos/kokkos-kernels

Matching patch for kokkos/kokkos-kernels#2353

A performance regression in KokkosSparse::sort_crs_matrix was introduced in #13401, where sort_crs_matrix was changed to use Kokkos::Experimental::sort_by_key in certain cases.
One of the MueLu setup performance tests catches one of those cases:

muelu/test/scaling/MueLu_Driver.exe" "--stacked-timer" "--nx=120" "--ny=120" "--nz=120" "--matrixType=Laplace3D"

On MI300 this manifested as a ~60x slowdown in Tpetra's matrix transpose because sort_by_key is only fast on AMD when Kokkos can use the rocThrust TPL, which Trilinos does not support. This PR also preemptively attempts to avoid falling in to the same trap on SYCL. For CUDA, Thrust TPL is always available, so this is not a problem.

Config	Local Transpose Time (s)
Before 13401	0.056
After 13401	0.34
This PR	0.056

trilinos-autotester · 2024-10-03T18:03:53Z

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trilinos-autotester · 2024-10-03T18:11:43Z

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Pull Request Author: cwpearson

ndellingwood

Changes in kokkos/kokkos-kernels#2353 were approved and AT2 testing passed
Please hold off on merge of this PR until the corresponding kokkos-kernels PR merges to develop

ndellingwood · 2024-10-03T18:30:32Z

@cwpearson in case it is helpful as a follow up, I had started a PR #12826 to add rocthrust support in Trilinos, if useful that can be revisited

cwpearson · 2024-10-03T18:39:20Z

Let's revive that effort!

masterleinad · 2024-10-03T18:53:29Z

sort_by_key is only fast on AMD when Kokkos can use the rocThrust TPL, which Trilinos does not support.

I would expect that you can enable rocThrust in Trilinos via Kokkos after kokkos/kokkos#6164. I'd be curious to hear about problems with that.

cwpearson · 2024-10-03T20:29:05Z

Ah okay, we're just waiting for that change to make its way to develop (I guess one could do an external kokkos build today)

cwpearson · 2024-10-03T20:29:48Z

I think this PR will coexist peacefully with that change - you can see the linked Kokkos Kernels issue, but even enabling rocThrust is not necessarily a win (though it is an improvement over sorting on the host 😄 )

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trilinos-autotester · 2024-10-03T21:33:14Z

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masterleinad · 2024-10-03T21:34:33Z

I think this PR will coexist peacefully with that change - you can see the linked Kokkos Kernels issue, but even enabling rocThrust is not necessarily a win (though it is an improvement over sorting on the host 😄 )

Yes, I just wanted to clarify.

trilinos-autotester · 2024-10-04T21:51:39Z

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trilinos-autotester · 2024-10-07T17:43:47Z

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Using Repos:

Repo: TRILINOS (cwpearson/Trilinos)

Pull Request Author: cwpearson

lucbv

Lgtm

trilinos-autotester · 2024-10-07T21:08:32Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

Build Information

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CDash Test Results for PR# 13502.

Wiki: How to Reproduce PR Testing Builds and Errors.

trilinos-autotester · 2024-10-08T21:20:42Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

trilinos-autotester · 2024-10-08T21:27:05Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

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Using Repos:

Repo: TRILINOS (cwpearson/Trilinos)

Pull Request Author: cwpearson

trilinos-autotester · 2024-10-09T01:03:49Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

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Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	rhel8_sems-intel-2021.3-sems-openmpi-4.1.6_release-debug_shared_no-kokkos-arch_no-asan_no-complex_fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS	pkg: KokkosKernels;AT: RETEST
PULLREQUESTNUM	13502
PULLREQUEST_CDASH_TRACK	Pull Request
TEST_REPO_ALIAS	TRILINOS
TRILINOS_NODE_LABEL	rhel8
TRILINOS_SOURCE_REPO	https://github.com/cwpearson/Trilinos
TRILINOS_SOURCE_SHA	`7031709`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`4734595`

Build Information

Test Name: PR_cuda-uvm

Build Num: 651
Status: PASSED

Jenkins Parameters

Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	rhel8_sems-cuda-11.4.2-gnu-10.1.0-openmpi-4.1.6_release_static_Volta70_no-asan_complex_no-fpic_mpi_pt_no-rdc_uvm_deprecated-on_no-package-enables
PR_LABELS	pkg: KokkosKernels;AT: RETEST
PULLREQUESTNUM	13502
PULLREQUEST_CDASH_TRACK	Pull Request
TEST_REPO_ALIAS	TRILINOS
TRILINOS_NODE_LABEL	rhel8
TRILINOS_SOURCE_REPO	https://github.com/cwpearson/Trilinos
TRILINOS_SOURCE_SHA	`7031709`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`4734595`

CDash Test Results for PR# 13502.

trilinos-autotester · 2024-10-09T01:04:10Z

Status Flag 'Pre-Merge Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED AND APPROVED by [ ndellingwood lucbv ]!

trilinos-autotester · 2024-10-09T01:04:17Z

Status Flag 'Pull Request AutoTester' - AutoMerge IS ENABLED, but the Label AT: AUTOMERGE is not set. Either set Label AT: AUTOMERGE or manually merge the PR...

cwpearson requested a review from ndellingwood October 3, 2024 17:54

cwpearson requested a review from a team as a code owner October 3, 2024 17:54

ndellingwood approved these changes Oct 3, 2024

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ndellingwood added the pkg: KokkosKernels label Oct 3, 2024

match kokkos-kernels PR 2353

7031709

Signed-off-by: Carl Pearson <[email protected]>

cwpearson force-pushed the match/kokkos-kernels-2353 branch from 851dce3 to 7031709 Compare October 7, 2024 17:32

lucbv approved these changes Oct 7, 2024

View reviewed changes

cwpearson added the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Oct 8, 2024

trilinos-autotester removed the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Oct 9, 2024

cwpearson merged commit 5175a38 into trilinos:develop Oct 9, 2024
23 checks passed

cwpearson deleted the match/kokkos-kernels-2353 branch October 9, 2024 15:49

KokkosKernels: match #2353 #13502

KokkosKernels: match #2353 #13502

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cwpearson commented Oct 3, 2024 • edited Loading

trilinos-autotester commented Oct 3, 2024

trilinos-autotester commented Oct 3, 2024

Build Information

Test Name: PR_gcc-openmpi-openmp

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Test Name: PR_gcc

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Test Name: PR_gcc-openmpi_debug

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Test Name: PR_clang

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Test Name: Trilinos_PR_python3

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Test Name: PR_cuda

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Test Name: PR_intel

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Test Name: PR_cuda-uvm

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cwpearson commented Oct 3, 2024 • edited Loading

trilinos-autotester commented Oct 3, 2024

Build Information

Test Name: PR_gcc-openmpi-openmp

Jenkins Parameters

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Test Name: PR_gcc

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Test Name: PR_gcc-openmpi_debug

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Test Name: PR_clang

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Test Name: Trilinos_PR_python3

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Test Name: PR_cuda

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Test Name: PR_intel

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Test Name: PR_cuda-uvm

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trilinos-autotester commented Oct 3, 2024

trilinos-autotester commented Oct 3, 2024

masterleinad commented Oct 3, 2024

trilinos-autotester commented Oct 4, 2024

trilinos-autotester commented Oct 5, 2024

trilinos-autotester commented Oct 6, 2024

trilinos-autotester commented Oct 7, 2024

trilinos-autotester commented Oct 7, 2024

Build Information

Test Name: PR_gcc-openmpi-openmp

Jenkins Parameters

Build Information

Test Name: PR_gcc

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Build Information

Test Name: PR_gcc-openmpi_debug

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cwpearson commented Oct 3, 2024 •

edited

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cwpearson commented Oct 3, 2024 •

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