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ignore scipy test failures when installing SciPy-bundle for A64FX
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boegel committed Jun 26, 2024
1 parent dbf12e1 commit 80d8d6e
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Showing 2 changed files with 23 additions and 6 deletions.
22 changes: 16 additions & 6 deletions eb_hooks.py
Original file line number Diff line number Diff line change
Expand Up @@ -488,20 +488,30 @@ def pre_test_hook_ignore_failing_tests_FFTWMPI(self, *args, **kwargs):
def pre_test_hook_ignore_failing_tests_SciPybundle(self, *args, **kwargs):
"""
Pre-test hook for SciPy-bundle: skip failing tests for selected SciPy-bundle versions
In version 2021.10, 2 failing tests in scipy 1.6.3:
In version 2021.10 on neoverse_v1, 2 failing tests in scipy 1.6.3:
FAILED optimize/tests/test_linprog.py::TestLinprogIPSparse::test_bug_6139 - A...
FAILED optimize/tests/test_linprog.py::TestLinprogIPSparsePresolve::test_bug_6139
= 2 failed, 30554 passed, 2064 skipped, 10992 deselected, 76 xfailed, 7 xpassed, 40 warnings in 380.27s (0:06:20) =
In versions 2023.02, 2023.07, and 2023.11, 2 failing tests in scipy (versions 1.10.1, 1.11.1, 1.11.4):
In versions 2023.02 + 2023.07 + 2023.11 on neoverse_v1, 2 failing tests in scipy (versions 1.10.1, 1.11.1, 1.11.4):
FAILED scipy/spatial/tests/test_distance.py::TestPdist::test_pdist_correlation_iris
FAILED scipy/spatial/tests/test_distance.py::TestPdist::test_pdist_correlation_iris_float32
= 2 failed, 54409 passed, 3016 skipped, 223 xfailed, 13 xpassed, 10917 warnings in 892.04s (0:14:52) =
In previous versions we were not as strict yet on the numpy/SciPy tests
In version 2023.07 on a64fx, 4 failing tests in scipy 1.11.1:
FAILED scipy/optimize/tests/test_linprog.py::TestLinprogIPSparse::test_bug_6139
FAILED scipy/optimize/tests/test_linprog.py::TestLinprogIPSparsePresolve::test_bug_6139
FAILED scipy/spatial/tests/test_distance.py::TestPdist::test_pdist_correlation_iris
FAILED scipy/spatial/tests/test_distance.py::TestPdist::test_pdist_correlation_iris_float32
= 4 failed, 54407 passed, 3016 skipped, 223 xfailed, 13 xpassed, 10917 warnings in 6068.43s (1:41:08) =
(in previous versions we were not as strict yet on the numpy/SciPy tests)
"""
cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
scipy_bundle_versions = ('2021.10', '2023.02', '2023.07', '2023.11')
if self.name == 'SciPy-bundle' and self.version in scipy_bundle_versions and cpu_target == CPU_TARGET_NEOVERSE_V1:
self.cfg['testopts'] = "|| echo ignoring failing tests"
scipy_bundle_versions_nv1 = ('2021.10', '2023.02', '2023.07', '2023.11')
scipy_bundle_versions_a64fx = ('2023.07', '2023.11')
if self.name == 'SciPy-bundle':
if cpu_target == CPU_TARGET_NEOVERSE_V1 and self.version in scipy_bundle_versions_nv1:
self.cfg['testopts'] = "|| echo ignoring failing tests"
elif cpu_target == CPU_TARGET_A64FX and self.version in scipy_bundle_versions_a64fx:
self.cfg['testopts'] = "|| echo ignoring failing tests"

def pre_test_hook_ignore_failing_tests_netCDF(self, *args, **kwargs):
"""
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7 changes: 7 additions & 0 deletions eessi-2023.06-known-issues.yml
Original file line number Diff line number Diff line change
@@ -1,3 +1,10 @@
- aarch64/a64x:
- SciPy-bundle-2023.07-gfbf-2023a:
- issue: https://github.com/EESSI/software-layer/issues/318
- info: "4 failing tests (vs 54407 passed) in scipy test suite"
- SciPy-bundle-2023.11-gfbf-2023b:
- issue: https://github.com/EESSI/software-layer/issues/318
- info: "3 failing tests (vs 54875 passed) in scipy test suite"
- aarch64/generic:
- PyTorch-2.1.2-foss-2023a:
- issue: https://github.com/EESSI/software-layer/issues/461
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