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TESTING bot PR254 with EESSI/SWL PR467 (Run test suite based on pr366) #69

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TESTING bot PR254 with EESSI/SWL PR467 (Run test suite based on pr366) #69

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Commits on Oct 14, 2023

  1. first version of bot/test.sh script

    @truib
    truib committed Oct 14, 2023
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Commits on Oct 15, 2023

  1. scripts to run tests after a build job has finished

    @truib
    truib committed Oct 15, 2023
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  2. small adjustments to test script

    @truib
    truib committed Oct 15, 2023
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Commits on Feb 5, 2024

  1. Second attempt at having the bot run the test suite, now based on Tho… 

    …mas' PR 366
    Caspar van Leeuwen committed Feb 5, 2024
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  2. Merge upstream into old feature branch based on pr366

    Caspar van Leeuwen committed Feb 5, 2024
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  3. Make a very simple change to an easystack file so we are able to trig… 

    …ger the bot build and test procedures and see if this PR actually works
    Caspar van Leeuwen committed Feb 5, 2024
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Commits on Feb 6, 2024

  1. Make scripts executable

    Caspar van Leeuwen committed Feb 6, 2024
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  2. Check for existence of SLURM output first

    Caspar van Leeuwen committed Feb 6, 2024
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  3. Clarify return messages from the bot

    Caspar van Leeuwen committed Feb 6, 2024
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  4. Use EESSI_SOFTWARE_PATH instead of EASYBUILD_INSTALLPATH to set the m… 

    …odulepath. It should be the same, and we no longer configure EasyBuild, since we don't use it when running the test suite
    Caspar van Leeuwen committed Feb 6, 2024
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  5. Do git clone in a seperate script, so that that can be run in the pre… 

    …fix layer
    Caspar van Leeuwen committed Feb 6, 2024
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  6. Should use the one from current dir

    Caspar van Leeuwen committed Feb 6, 2024
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  7. Remove quotes, see if that helps

    Caspar van Leeuwen committed Feb 6, 2024
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  8. Apparently, we need to remove curly braces too

    Caspar van Leeuwen committed Feb 6, 2024
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  9. Make sure this actually gets reported as failure, as the ReFrame runt… 

    …ime fails to run the test suite (it is not an indication of tests failing themselves).
    Caspar van Leeuwen committed Feb 6, 2024
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  10. Fix the actual issue: make sure that two arguments are interpreted se… 

    …perately by not quoting them
    Caspar van Leeuwen committed Feb 6, 2024
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  11. See if we can make check-test formatting more fancy

    Caspar van Leeuwen committed Feb 6, 2024
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  12. Replace the env var for the result file

    Caspar van Leeuwen committed Feb 6, 2024
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  13. Add missing functions

    Caspar van Leeuwen committed Feb 6, 2024
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  14. Remove artefacts from reporting

    Caspar van Leeuwen committed Feb 6, 2024
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  15. Add a reason for the failure

    Caspar van Leeuwen committed Feb 6, 2024
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  16. Fixed missing bracket

    Caspar van Leeuwen committed Feb 6, 2024
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  17. Add reporting of the ReFrame result

    Caspar van Leeuwen committed Feb 6, 2024
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  18. Add missing bracket. Again

    Caspar van Leeuwen committed Feb 6, 2024
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  19. Add some echo for debugging

    Caspar van Leeuwen committed Feb 6, 2024
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  20. more debugging output

    Caspar van Leeuwen committed Feb 6, 2024
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  21. Lets try some nicer formatting with headers etc. See if this actually… 

    … prints something.
    Caspar van Leeuwen committed Feb 6, 2024
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  22. Inverse check, it was incorrect

    Caspar van Leeuwen committed Feb 6, 2024
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  23. Remove debugging output

    Caspar van Leeuwen committed Feb 6, 2024
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  24. Correct the regex pattern to account for the fact that the slurm outp… 

    …ut file contains special characters in that pattern that are NOT whitespace
    Caspar van Leeuwen committed Feb 6, 2024
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  25. Corrected typo

    Caspar van Leeuwen committed Feb 6, 2024
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  26. Trigger failure in the workflow on purpose, to show what that looks like

    Caspar van Leeuwen committed Feb 6, 2024
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  27. Change order of checking error codes. If the ReFrame tests ran and we… 

    … find that pattern, that should take priority. Other errors might have come from errors in the build phase...
    Caspar van Leeuwen committed Feb 6, 2024
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Commits on Feb 7, 2024

  1. Make sure we don't overwrite the grepped result from failures

    Caspar van Leeuwen committed Feb 7, 2024
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  2. Fix plural/singular typo

    Caspar van Leeuwen committed Feb 7, 2024
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  3. Be a bit more expressive about what we are doing

    Caspar van Leeuwen committed Feb 7, 2024
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  4. Change to dedicated config file for testing by the bot in the build job

    Caspar van Leeuwen committed Feb 7, 2024
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  5. Make it verbose, see if we can see why autodetect fails

    Caspar van Leeuwen committed Feb 7, 2024
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  6. Add ReFrame config template. Not that four template variables need to… 

    … be replaced for this to be a valid ReFrame config file
    Caspar van Leeuwen committed Feb 7, 2024
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  7. Use template config file and make replacements based on lscpu

    Caspar van Leeuwen committed Feb 7, 2024
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  8. Fix incorrect variable name

    Caspar van Leeuwen committed Feb 7, 2024
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  9. Missing comma

    Caspar van Leeuwen committed Feb 7, 2024
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  10. Corrected typo

    Caspar van Leeuwen committed Feb 7, 2024
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  11. Remove verbose flags

    Caspar van Leeuwen committed Feb 7, 2024
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  12. Pick name without spaces, to avoid issues with directories

    Caspar van Leeuwen committed Feb 7, 2024
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Commits on Feb 8, 2024

  1. Pick more meaningful name for SLURM variable, namely SLURM_OUTPUT_FOUND

    Caspar van Leeuwen committed Feb 8, 2024
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  2. Correct erroneous status

    Caspar van Leeuwen committed Feb 8, 2024
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  3. Rename CoDeList variable to comment_details_list

    Caspar van Leeuwen committed Feb 8, 2024
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  4. Remove commented section, it is not relevant

    Caspar van Leeuwen committed Feb 8, 2024
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  5. Update run_tests.sh 

    Avoid a one-line script (if possible)

Co-authored-by: Kenneth Hoste <[email protected]>
    @casparvl @boegel
    casparvl and boegel authored Feb 8, 2024
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  6. Fix mistake in replacing SLURM with SLURM_OUTPUT_FOUND

    Caspar van Leeuwen committed Feb 8, 2024
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  7. Merge branch 'run_test_suite_based_on_pr366' of github.com:casparvl/s… 

    …oftware-layer into run_test_suite_based_on_pr366
    Caspar van Leeuwen committed Feb 8, 2024
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  8. Change name of the template for the ReFrame config file to make clear… 

    … it is a template. Then, alter the sed commands so that they output to a new file: the actual config file
    Caspar van Leeuwen committed Feb 8, 2024
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  9. Fix typo in variable

    Caspar van Leeuwen committed Feb 8, 2024
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  10. No longer needed

    Caspar van Leeuwen committed Feb 8, 2024
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  11. Added header, rephrased some comments

    Caspar van Leeuwen committed Feb 8, 2024
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  12. Fix headers

    Caspar van Leeuwen committed Feb 8, 2024
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  13. Load default ReFrame version

    Caspar van Leeuwen committed Feb 8, 2024
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  14. Point to docs for ReFrame config

    Caspar van Leeuwen committed Feb 8, 2024
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  15. Fix silly mistake: I was overwriting the ReFrame config file with eve… 

    …ry sed call
    Caspar van Leeuwen committed Feb 8, 2024
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  16. See if @boegel is correct and if we don't actually need ANY software … 

    …change to have the bot run...
    Caspar van Leeuwen committed Feb 8, 2024
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Commits on Feb 11, 2024

  1. {2023.06}[foss/2022b] ImageMagick v7.1.0-53

    @truib
    truib committed Feb 11, 2024
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Commits on Feb 14, 2024

  1. Add escape character to star, so that the regex pattern prints correc… 

    …tly on GitHub in the report
    Caspar van Leeuwen committed Feb 14, 2024
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Commits on Feb 15, 2024

  1. Always use LMOD_RC file, and make sure loading CUDA apps always works… 

    … when building
    @ocaisa
    ocaisa committed Feb 15, 2024
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  2. Add the list(SCALES.keys()) feature (though technically we could limi… 

    …t to singlenode already here...). Also, make sure color is not used for printing the ReFrame results, to avoid color-characters making it into the slurm output file
    Caspar van Leeuwen committed Feb 15, 2024
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  3. Try the original regex patterns, capturing spaces more specifically, … 

    …now that we got rid of color characters
    Caspar van Leeuwen committed Feb 15, 2024
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Commits on Feb 16, 2024

  1. Update eessi-2023.06-eb-4.9.0-2022b.yml

    @Neves-P
    Neves-P authored Feb 16, 2024
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  2. Add waLBerla v6.1 foss2022b 

    Fix easybuild PR number
    @Neves-P
    Neves-P authored Feb 16, 2024
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Commits on Feb 17, 2024

  1. add missing ':' for waLBerla entry

    @boegel
    boegel authored Feb 17, 2024
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Commits on Feb 19, 2024

  1. Merge pull request EESSI#478 from Neves-P/2023.06-software.eessi.io-w… 

    …aLBerla6.1-foss2022b

{2023.06}[foss/2022b] waLBerla v6.1
    @bedroge
    bedroge authored Feb 19, 2024
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  2. Remove manual setup of MODULEPATH etc, and source the regular EESSI i… 

    …nit script to do this
    Caspar van Leeuwen committed Feb 19, 2024
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Commits on Feb 20, 2024

  1. {2023.06}[foss/2023b] WSClean 3.4 + DP3 6.0

    Tim Kok committed Feb 20, 2024
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  2. Remove AOFlagger (Lua is no longer part of filter-deps)

    Tim Kok committed Feb 20, 2024
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  3. Include easyblocks from pr 3088 to fix Python path

    Tim Kok committed Feb 20, 2024
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  4. Fix typo

    Tim Kok committed Feb 20, 2024
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Commits on Feb 21, 2024

  1. List dependencies first

    Tim Kok committed Feb 21, 2024
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  2. fix typo in IDG version

    @bedroge
    bedroge authored Feb 21, 2024
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  3. Include Armadillo-12.8.0-foss-2023b.eb

    Tim Kok committed Feb 21, 2024
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  4. Revert "Include Armadillo-12.8.0-foss-2023b.eb" 

    This reverts commit b72730eecd5265829b58e8b09c7476d460bb011a.
    Tim Kok committed Feb 21, 2024
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  5. Include Armadillo-12.8.0-foss-2023b.eb

    Tim Kok committed Feb 21, 2024
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  6. Include arpack-ng-3.9.0-foss-2023b.eb

    Tim Kok committed Feb 21, 2024
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Commits on Feb 22, 2024

  1. Disable 'vectorize' toolchain option for casacore 3.5.0 on aarch64/ne… 

    …overse_v1 with eb_hook
    Tim Kok committed Feb 22, 2024
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  2. Remove empty line

    Tim Kok committed Feb 22, 2024
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  3. Cleanup code

    Tim Kok committed Feb 22, 2024
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  4. add WRF-4.4.1-foss-2022b-dmpar.eb

    @bedroge
    bedroge committed Feb 22, 2024
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Commits on Feb 23, 2024

  1. Merge pull request EESSI#480 from bedroge/wrf_4.4.1_2022b 

    {2023.06}[foss/2022b] WRF v4.4.1
    @boegel
    boegel authored Feb 23, 2024
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  2. Retrieve cpu_target from EESSI env vars 

    Co-authored-by: Bob Dröge <[email protected]>
    @t1mk1k @bedroge
    t1mk1k and bedroge authored Feb 23, 2024
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  3. Specify print message for skipping non-neoverse_v1

    Tim Kok committed Feb 23, 2024
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Commits on Feb 26, 2024

  1. Create toolchainopts dict if it does not exist

    Tim Kok committed Feb 26, 2024
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Commits on Feb 27, 2024

  1. Enable lax vector conversion for DP3

    Tim Kok committed Feb 27, 2024
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Commits on Feb 28, 2024

  1. {2023.06}[foss/2023a] dask v2023.9.2

    Richard Top committed Feb 28, 2024
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  2. fixed info

    Richard Top committed Feb 28, 2024
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  3. removed the hook and added --from-pr

    Richard Top committed Feb 28, 2024
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Commits on Feb 29, 2024

  1. Temporary fix for CI by pinning archspec version

    @ocaisa
    ocaisa committed Feb 29, 2024
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  2. Merge pull request EESSI#482 from ocaisa/fix_ci 

    Temporary fix for CI by pinning archspec version
    @boegel
    boegel authored Feb 29, 2024
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  3. Merge branch '2023.06-software.eessi.io' of gh-nessi:EESSI/software-l… 

    …ayer into eessi-2023.06-dask/9.2-foss/2023a
    Richard Top committed Feb 29, 2024
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  4. remove-blanks

    @TopRichard
    TopRichard authored Feb 29, 2024
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  5. Update easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-20… 

    …23a.yml
    @ocaisa
    ocaisa authored Feb 29, 2024
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  6. Update easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-20… 

    …23a.yml
    @ocaisa
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  7. Make check_missing_installations.sh check against develop branch of E… 

    …asyBuild
    @ocaisa
    ocaisa committed Feb 29, 2024
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  8. Use filename rather than full path

    @ocaisa
    ocaisa committed Feb 29, 2024
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  9. export envvar

    @ocaisa
    ocaisa committed Feb 29, 2024
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Commits on Mar 1, 2024

  1. Merge pull request EESSI#481 from TopRichard/eessi-2023.06-dask/9.2-f… 

    …oss/2023a

{2023.06}[foss/2023a] dask v2023.9.2
    @ocaisa
    ocaisa authored Mar 1, 2024
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  2. Merge pull request EESSI#486 from ocaisa/tweak_check_missing 

    Make check_missing_installations.sh check against develop branch of EasyBuild
    @boegel
    boegel authored Mar 1, 2024
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  3. Adding OSU microbenchmarks with GPU support for 2023a, and one withou… 

    …t GPU support for 2023b
    Caspar van Leeuwen committed Mar 1, 2024
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  4. 'which' is not working in the container, command -v is

    Caspar van Leeuwen committed Mar 1, 2024
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  5. Workaround for 'PSM3 can't open nic unit' error

    Caspar van Leeuwen committed Mar 1, 2024
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  6. Merge pull request EESSI#487 from casparvl/osu_gpu 

    {2023.06}[gompi/2023a,gompi/2023b] OSU Microbenchmarks v 7.1.1, OSU Microbenchmarks v 7.2 w/ CUDA 12.1.1
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Commits on Mar 4, 2024

  1. Use LMOD_CONFIG_DIR instead of LMOD_RC to allow user overrides of wha… 

    …t we specify in our RC file, see search order on https://lmod.readthedocs.io/en/latest/145_properties.html?highlight=lmod_rc#the-properties-file-lmodrc-lua . Also, prefix our hooks with eessi_ to avoid unintentional clashes in namespace between site lmod configuration and eessi lmod configuration
    Caspar van Leeuwen committed Mar 4, 2024
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Commits on Mar 5, 2024

  1. Combine functions into a single function, before registering this as … 

    …a hook. Lmod only permits the registration of a single function, trying to register a second function will just overwrite the first, as can be seen from https://github.com/TACC/Lmod/blob/a97d68193a6f32ebca4b4bd70dac0f6ac8fddefe/src/Hook.lua#L87
    Caspar van Leeuwen committed Mar 5, 2024
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  2. Look for site-specific lmodrc file in host_injections. If present, se… 

    …t LMOD_RC
    Caspar van Leeuwen committed Mar 5, 2024
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Commits on Mar 6, 2024

  1. Next the local lmodrc within the versioned directory, e.g. /cvmfs/sof… 

    …tware.eessi.io/host_injections/2023.06/.lmod/lmodrc.lua
    Caspar van Leeuwen committed Mar 6, 2024
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  2. Update init/eessi_environment_variables

    @ocaisa
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  3. Update init/eessi_environment_variables

    @ocaisa
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  4. Update init/eessi_environment_variables

    @ocaisa
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Commits on Mar 7, 2024

  1. {2023.06}[gompi/2023b] CDO v2.2.2

    Richard Top committed Mar 7, 2024
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  2. Merge pull request EESSI#492 from TopRichard/eessi-2023.06-CDO/2.2.2-… 

    …gompi/2023b

{2023.06}[gompi/2023b] CDO v2.2.2
    @ocaisa
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  3. Revert changes in eessi_environment_variables. Limit this PR to the b… 

    …ug fix only. We can follow up properly using SitePackage.lua instead
    Caspar van Leeuwen committed Mar 7, 2024
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  4. Merge pull request EESSI#490 from casparvl/change_lmodrc_setup 

    Workaround for LMOD only allowing a single hook to be registered, which made our first hook unused
    @ocaisa
    ocaisa authored Mar 7, 2024
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Commits on Mar 8, 2024

  1. Allow for open PRs when checking missing installations in build script

    @ocaisa
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Commits on Mar 9, 2024

  1. Check for unmerged EasyConfig output pattern

    Caspar van Leeuwen committed Mar 9, 2024
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  2. Merge branch 'tweak_missing_installs' into improve_error_on_unmerged_pr

    Caspar van Leeuwen committed Mar 9, 2024
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  3. First, try without --from-pr. If that fails, try with --from-pr, but … 

    …only for items added to the EasyStack file in _this_ PR to software-layer. If that succeeds, the reason must be that one of the EasyBuild PRs wasn't merged yet, and we can add that information to the fail_msg to make it more explicit
    Caspar van Leeuwen committed Mar 9, 2024
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  4. Add CFITSIO as a test example, see if we can get a clear error messag… 

    …e printed on a build failure here
    Caspar van Leeuwen committed Mar 9, 2024
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  5. Added clarifying comment

    Caspar van Leeuwen committed Mar 9, 2024
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  6. Correct mistake: I meant to _move_ the awk part, not duplicate it

    Caspar van Leeuwen committed Mar 9, 2024
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  7. Now actually check against the exit code of the pipe...

    Caspar van Leeuwen committed Mar 9, 2024
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  8. Make seperate exit code for the run that allows --from-pr

    Caspar van Leeuwen committed Mar 9, 2024
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Commits on Mar 11, 2024

  1. Remove ineffective DP3 hook

    Tim Kok committed Mar 11, 2024
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  2. Merge upstream changes into branch

    Tim Kok committed Mar 11, 2024
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  3. {2023.06}[2023a] JupyterNotebook v7.0.2

    @boegel
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  4. Correct typo 

    Co-authored-by: ocaisa <[email protected]>
    @casparvl @ocaisa
    casparvl and ocaisa authored Mar 11, 2024
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  5. Skip the if-condition also if pr_exceptions is empty. There is no poi… 

    …nt in running the eb --missing again in that case, since there were no --from-pr's in this PR to begin with, so unmerged PRs cannot be the reason for failing
    Caspar van Leeuwen committed Mar 11, 2024
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  6. Merge branch 'improve_error_on_unmerged_pr' of github.com:casparvl/so… 

    …ftware-layer into improve_error_on_unmerged_pr
    Caspar van Leeuwen committed Mar 11, 2024
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Commits on Mar 12, 2024

  1. Merge pull request EESSI#495 from boegel/2023.06-software.eessi.io_Ju… 

    …pyterNotebook
    @bedroge
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  2. Merge pull request EESSI#479 from t1mk1k/new_pr_wsclean_dp3_2023b 

    {2023.06}[foss/2023b] WSClean 3.4 + DP3 6.0
    @ocaisa
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  3. {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3

    Tim Kok committed Mar 12, 2024
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  4. Merge branch '2023.06-software.eessi.io' into 2023.06-software-imagem… 

    …agick-foss-2022b
    @bedroge
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  5. add ImageMagick-7.1.1-15-GCCcore-12.3.0.eb

    @bedroge
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  6. Merge pull request EESSI#470 from trz42/2023.06-software-imagemagick-… 

    …foss-2022b

{2023.06}[foss/2022b] ImageMagick v7.1.0-53
    @boegel
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  7. Merge pull request EESSI#498 from bedroge/imagemagick_2023a 

    {2023.06}[2023a] ImageMagick v7.1.1-15
    @boegel
    boegel authored Mar 12, 2024
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  8. Use PR that sets LD_LIBRARY_PATH for python-casacore

    Tim Kok committed Mar 12, 2024
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  9. Merge pull request EESSI#497 from t1mk1k/new_pr_python_casacore_libsp… 

    …atial_index_2023b

{2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3
    @bedroge
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Commits on Mar 13, 2024

  1. Merge pull request EESSI#475 from ocaisa/always_lmod_rc 

    Always set `$LMOD_RC` (even when `EESSI_BASIC_ENV` is set), and make sure loading CUDA apps always work when building
    @boegel
    boegel authored Mar 13, 2024
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  2. Merge branch '2023.06-software.eessi.io' into improve_error_on_unmerg… 

    …ed_pr
    @boegel
    boegel committed Mar 13, 2024
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  3. Update bot/check-build.sh 

    Co-authored-by: Kenneth Hoste <[email protected]>
    @ocaisa @boegel
    ocaisa and boegel authored Mar 13, 2024
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  4. Remove PR to trigger comment 

    Co-authored-by: Kenneth Hoste <[email protected]>
    @ocaisa @boegel
    ocaisa and boegel authored Mar 13, 2024
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  5. Trigger on any non-zero exit code 

    Co-authored-by: Kenneth Hoste <[email protected]>
    @ocaisa @boegel
    ocaisa and boegel authored Mar 13, 2024
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  6. Merge pull request EESSI#494 from casparvl/improve_error_on_unmerged_pr 

    Improve error reported by bot when using unmerged EasyBuild PR in easystack file
    @boegel
    boegel authored Mar 13, 2024
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Commits on Mar 14, 2024

  1. Add Z3 with new module name 

    Via easybuilders/easybuild-easyconfigs#20050 , the different Z3 easyconfigs have been consolidated. This means the version used as a dependency for PyTorch has been "corrected" so we need to dance around that for our CI purposes
    @ocaisa
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  2. Merge pull request EESSI#502 from EESSI/ocaisa-patch-6 

    {2023.06}[foss/2023a] Z3 4.12.2
    @bedroge
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  3. {2023.06}[2023a] PyOpenGL 3.1.7

    @boegel
    boegel committed Mar 14, 2024
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  4. add from-pr=20007

    @bedroge
    bedroge authored Mar 14, 2024
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Commits on Mar 15, 2024

  1. Merge pull request EESSI#503 from boegel/2023.06-software.eessi.io_20… 

    …23a_PyOpenGL

{2023.06}[2023a] PyOpenGL 3.1.7
    @bedroge
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  2. {2023.06}[2023a] ipympl 0.9.3

    @boegel
    boegel committed Mar 15, 2024
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  3. fix check_missing_installations.sh when unmerged PR is used

    @boegel
    boegel committed Mar 15, 2024
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  4. Merge pull request EESSI#506 from boegel/2023.06-software.eessi.io_fi… 

    …x-check-missing-installations

fix check_missing_installations.sh when unmerged PR is used
    @ocaisa
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  5. Merge branch '2023.06-software.eessi.io' into 2023.06-software.eessi.… 

    …io_ipympl
    @boegel
    boegel committed Mar 15, 2024
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Commits on Mar 16, 2024

  1. Merge pull request EESSI#505 from boegel/2023.06-software.eessi.io_ip… 

    …ympl

{2023.06}[2023a] ipympl 0.9.3
    @bedroge
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Commits on Mar 22, 2024

  1. Merge branch '2023.06-software.eessi.io' into run_test_suite_based_on… 

    …_pr366
    @casparvl
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Commits on Mar 26, 2024

  1. also dump status to test result file

    @boegel
    boegel authored Mar 26, 2024
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  2. add Caspar as author in bot/test.sh script

    @boegel
    boegel authored Mar 26, 2024
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  3. use read-only mode to access software installations via container

    @boegel
    boegel authored Mar 26, 2024
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  4. fix typo: build -> test

    @boegel
    boegel authored Mar 26, 2024
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  5. disable CPU auto-detection in template ReFrame configuration script u… 

    …sed for running test suite
    @boegel
    boegel authored Mar 26, 2024
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  6. pass down --generic to script used for running test suite, so tests a… 

    …re run with generic software installations when intended
    @boegel
    boegel authored Mar 26, 2024
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