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Experimental hmm#959

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jeromekelleher wants to merge 9 commits intotskit-dev:0.3.3-backporttskit-dev/tsinfer:0.3.3-backportfrom jeromekelleher:experimental-hmmjeromekelleher/tsinfer:experimental-hmmCopy head branch name to clipboard

+306-83

Commits

Commits on Sep 4, 2024

• Do not weight recombination by n in LS HMM

  jeromekelleher

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• C lib changes for precision->likelihood_threshold

  jeromekelleher

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• Python changes for precision->likelihood_thresold

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  jeromekelleher

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Commits on Nov 5, 2024

• Port version of tskit's blk_alloc using c11 atomics

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  jeromekelleher

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  57f9209

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• Workaround lack of Windows support for stdatomic.h

  jeromekelleher

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  a09bf7c

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• Skip problematic test and fix formatting issue

  jeromekelleher

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• C changes to enable non-zero ancestral state

  jeromekelleher

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  57594f4

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• Add low-level Python-C support for arbirary ancestral state

  jeromekelleher

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Commits on Nov 6, 2024

• Remove requirement that alleles are < num_alleles

  jeromekelleher

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  7522bcc

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