Merge pull request #16 from uab-cgds-worthey/opencrevat-parsing

Opencrevat parsing
uab-cgds-worthey · Apr 26, 2023 · 4bb01fc · 4bb01fc
2 parents 12125b1 + 1e14ffb
commit 4bb01fc
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diff --git a/.gitmodules b/.gitmodules
@@ -1,6 +0,0 @@
-[submodule "variant_annotation/configs/snakemake_profile"]
-	path = variant_annotation/configs/snakemake_profile
-	url = [email protected]:center-for-computational-genomics-and-data-science/sciops/pipelines/small_variant_caller_pipeline.git
-[submodule "variant_annotation/configs/snakemake_slurm_profile"]
-	path = variant_annotation/configs/snakemake_slurm_profile
-	url = [email protected]:center-for-computational-genomics-and-data-science/sciops/external-projects/snakemake_slurm_profile.git

diff --git a/annotation_parsing/.test/testing_variants_hg38_vep-annotated.tsv b/annotation_parsing/.test/testing_variants_hg38_vep-annotated.tsv
diff --git a/annotation_parsing/README.md b/annotation_parsing/README.md
diff --git a/annotation_parsing/parse_annotated_vars.py b/annotation_parsing/parse_annotated_vars.py
diff --git a/configs/cluster_config.json b/configs/cluster_config.json