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v473 Genome Browser Software

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@jonathancasper jonathancasper released this 07 Nov 05:56
· 165 commits to master since this release

This is the v473 release of the UCSC Genome Browser. A summary of the relevant code changes includes:

  • Fix density mode for vcfTabix.
  • Fix problem with hubUrl being trashed if Genark hub was specified as db.
  • Ongoing work on behaving rationally when certain limits are exceeded in hgTracks.
  • Primer3 outlink from hgGene now gets +-200bp flanking seq around the first and last exon to design primers around the exons.
  • Fix freeType and Postscript handling to deal with UTF-8 encoded strings.
  • Adapting the tutorial reminder to say where users can find the tutorial if they click it away now.
  • Right click - move to top respects the ruler track.
  • Click OK when "enter" key is pressed on trackUi dialog box.
  • Now we just filter all the types, like BLATs guess, which makes them consistent and correct, the same as the default behavior it always had.
  • The configuration page for some track types can include a selector to change the track color, but the selectors for subtracks of a composite were all being placed in the configuration block of the first subtrack. They are now distributed among the subtracks.
  • Don't show download link to big* files on the table browser for non-distribution tracks.
  • Fixed jQuery upgrade bugs: group drag and drop of tracks, drop-down checklist position, checkboxes marked as change during a form submit.
  • Disable the "download track data in window" option on GBiBs since they don't have an API available.
  • More work on right-click - hide all other tracks.
  • Continuous GenArk process improvements.