UW-585: Build driver for SCHISM (#506)

* Build Schism driver framework

* Formatting fix

* fix schema errors

* Update src/uwtools/drivers/schism.py

Co-authored-by: Paul Madden <[email protected]>

* had to add logging to failing test

* fix copy/paste name error

* Apply suggestions from code review

Co-authored-by: Paul Madden <[email protected]>

* open template_values to all JSON types

---------

Co-authored-by: Paul Madden <[email protected]>

docs/sections/user_guide/yaml/components/index.rst

@@ -13,6 +13,7 @@ UW YAML for Components
    make_solo_mosaic
    mpas
    mpas_init
+   schism
    sfc_climo_gen
    shave
    ungrib

docs/sections/user_guide/yaml/components/schism.rst

@@ -0,0 +1,32 @@
+.. _schism_yaml:
+
+schism
+======
+
+Structured YAML to configure SCHISM as part of a compiled coupled executable is validated by JSON Schema and requires the ``schism:`` block, described below.
+
+Here is a prototype UW YAML ``schism:`` block, explained in detail below:
+
+.. highlight:: yaml
+.. literalinclude:: /shared/schism.yaml
+
+UW YAML for the ``schism:`` Block
+---------------------------------
+
+namelist:
+^^^^^^^^^
+
+  .. important:: The SCHISM namelist file is provisioned by rendering an input template file containing Jinja2 expressions. Unlike namelist files provisioned by ``uwtools`` for other components, the SCHISM namelist file will not be validated.
+
+  **template_file:**
+
+  The path to the input template file containing Jinja2 expressions (perhaps named ``param.nml.IN``), based on the ``param.nml`` file from the SCHISM build.
+
+  **template_values:**
+
+  Key-value pairs necessary to render all Jinja2 expressions in the input template file named by ``template_file:``.
+
+run_dir:
+^^^^^^^^
+
+The path to the run directory.

docs/shared/schism.yaml

@@ -0,0 +1,9 @@
+schism:
+  namelist:
+    template_file: /path/to/schism/param.nml.IN
+    template_values:
+      dt: 100
+  run_dir: /path/to/run/directory
+platform:
+  account: me
+  scheduler: slurm

src/uwtools/drivers/schism.py

@@ -0,0 +1,78 @@
+"""
+An assets driver for SCHISM.
+"""
+
+from datetime import datetime
+from pathlib import Path
+from typing import List, Optional
+
+from iotaa import asset, task, tasks
+
+from uwtools.api.template import render
+from uwtools.drivers.driver import Assets
+from uwtools.strings import STR
+from uwtools.utils.tasks import file
+
+
+class SCHISM(Assets):
+    """
+    An assets driver for SCHISM.
+    """
+
+    def __init__(
+        self,
+        cycle: datetime,
+        config: Optional[Path] = None,
+        dry_run: bool = False,
+        batch: bool = False,
+        key_path: Optional[List[str]] = None,
+    ):
+        """
+        The driver.
+
+        :param cycle: The cycle.
+        :param config: Path to config file (read stdin if missing or None).
+        :param dry_run: Run in dry-run mode?
+        :param batch: Run component via the batch system?
+        :param key_path: Keys leading through the config to the driver's configuration block.
+        """
+        super().__init__(
+            config=config, dry_run=dry_run, batch=batch, cycle=cycle, key_path=key_path
+        )
+        self._cycle = cycle
+
+    # Workflow tasks
+
+    @task
+    def namelist_file(self):
+        """
+        Render the namelist from the template file.
+        """
+        fn = "param.nml"
+        yield self._taskname(fn)
+        path = self._rundir / fn
+        yield asset(path, path.is_file)
+        template_file = Path(self._driver_config["namelist"]["template_file"])
+        yield file(path=template_file)
+        render(
+            input_file=template_file,
+            output_file=path,
+            overrides=self._driver_config["namelist"]["template_values"],
+        )
+
+    @tasks
+    def provisioned_run_directory(self):
+        """
+        Run directory provisioned with all required content.
+        """
+        yield self._taskname("provisioned run directory")
+        yield self.namelist_file()
+
+    # Private helper methods
+
+    @property
+    def _driver_name(self) -> str:
+        """
+        Returns the name of this driver.
+        """
+        return STR.schism

src/uwtools/resources/jsonschema/schism.jsonschema

@@ -0,0 +1,33 @@
+{
+  "properties": {
+    "schism": {
+      "additionalProperties": false,
+      "properties": {
+        "namelist": {
+          "additionalProperties": false,
+          "properties": {
+            "template_file": {
+              "type": "string"
+            },
+            "template_values": {
+              "minProperties": 1,
+              "type": "object"
+            }
+          },
+          "required": [
+            "template_file"
+          ],
+          "type": "object"
+        },
+        "run_dir": {
+          "type": "string"
+        }
+      },
+      "required": [
+        "namelist",
+        "run_dir"
+      ],
+      "type": "object"
+    }
+  }
+}

src/uwtools/resources/jsonschema/ww3.jsonschema

@@ -10,9 +10,7 @@
               "type": "string"
             },
             "template_values": {
-              "additionalProperties": {
-                "type": "string"
-              },
+              "minProperties": 1,
               "type": "object"
             }
           },

src/uwtools/strings.py

@@ -103,6 +103,7 @@ class STR:
     rocoto: str = "rocoto"
     run: str = "run"
     schemafile: str = "schema_file"
+    schism: str = "schism"
     searchpath: str = "search_path"
     sfcclimogen: str = "sfc_climo_gen"
     shave: str = "shave"

src/uwtools/tests/config/test_jinja2.py

@@ -433,6 +433,7 @@ def test__supplement_values_priority(supplemental_values):
 
 
 def test__values_needed(caplog):
+    log.setLevel(logging.DEBUG)
     undeclared_variables = {"roses_color", "lavender_smell"}
     jinja2._values_needed(undeclared_variables)
     assert logged(caplog, "Value(s) needed to render this template are:")

src/uwtools/tests/drivers/test_schism.py

@@ -0,0 +1,74 @@
+# pylint: disable=missing-function-docstring,protected-access,redefined-outer-name
+"""
+SCHISM driver tests.
+"""
+import datetime as dt
+from unittest.mock import DEFAULT as D
+from unittest.mock import patch
+
+import yaml
+from pytest import fixture
+
+from uwtools.drivers import schism
+
+# Fixtures
+
+
+@fixture
+def config(tmp_path):
+    return {
+        "schism": {
+            "namelist": {
+                "template_file": str(tmp_path / "param.nml.IN"),
+                "template_values": {
+                    "dt": 100,
+                },
+            },
+            "run_dir": str(tmp_path),
+        },
+    }
+
+
+@fixture
+def cycle():
+    return dt.datetime(2024, 2, 1, 18)
+
+
+@fixture
+def driverobj(config, cycle):
+    return schism.SCHISM(config=config, cycle=cycle, batch=True)
+
+
+# Tests
+
+
+def test_SCHISM(driverobj):
+    assert isinstance(driverobj, schism.SCHISM)
+
+
+def test_SCHISM_namelist_file(driverobj):
+    src = driverobj._driver_config["namelist"]["template_file"]
+    with open(src, "w", encoding="utf-8") as f:
+        yaml.dump({}, f)
+    dst = driverobj._rundir / "param.nml"
+    assert not dst.is_file()
+    driverobj.namelist_file()
+    assert dst.is_file()
+
+
+def test_SCHISM_provisioned_run_directory(driverobj):
+    with patch.multiple(
+        driverobj,
+        namelist_file=D,
+    ) as mocks:
+        driverobj.provisioned_run_directory()
+    for m in mocks:
+        mocks[m].assert_called_once_with()
+
+
+def test_SCHISM__driver_config(driverobj):
+    assert driverobj._driver_config == driverobj._config["schism"]
+
+
+def test_SCHISM__validate(driverobj):
+    driverobj._validate()

src/uwtools/tests/test_schemas.py

@@ -115,6 +115,11 @@ def sfc_climo_gen_prop():
     return partial(schema_validator, "sfc-climo-gen", "properties", "sfc_climo_gen", "properties")
 
 
+@fixture
+def schism_prop():
+    return partial(schema_validator, "schism", "properties", "schism", "properties")
+
+
 @fixture
 def shave_prop():
     return partial(schema_validator, "shave", "properties", "shave", "properties")
@@ -1131,6 +1136,51 @@ def test_schema_rocoto_workflow_cycledef():
     assert "'foo' is not valid" in errors([{"attrs": {"activation_offset": "foo"}, "spec": spec}])
 
 
+# schism
+
+
+def test_schema_schism():
+    config = {
+        "namelist": {
+            "template_file": "/tmp/param.nml",
+            "template_values": {
+                "dt": 100,
+            },
+        },
+        "run_dir": "/tmp",
+    }
+    errors = schema_validator("schism", "properties", "schism")
+    # Basic correctness:
+    assert not errors(config)
+    # All top-level keys are required:
+    for key in ("namelist", "run_dir"):
+        assert f"'{key}' is a required property" in errors(with_del(config, key))
+    # Additional top-level keys are not allowed:
+    assert "Additional properties are not allowed" in errors({**config, "foo": "bar"})
+
+
+def test_schema_schism_namelist(schism_prop):
+    errors = schism_prop("namelist")
+    # At least template_file is required:
+    assert "'template_file' is a required property" in errors({})
+    # Just template_file is ok:
+    assert not errors({"template_file": "/path/to/param.nml"})
+    # Both template_file and template_values are ok:
+    assert not errors(
+        {
+            "template_file": "/path/to/param.nml",
+            "template_values": {"dt": 100},
+        }
+    )
+
+
+def test_schema_schism_run_dir(schism_prop):
+    errors = schism_prop("run_dir")
+    # Must be a string:
+    assert not errors("/some/path")
+    assert "88 is not of type 'string'" in errors(88)
+
+
 # sfc-climo-gen
 
 
@@ -1399,7 +1449,7 @@ def test_schema_upp_run_dir(upp_prop):
     assert "88 is not of type 'string'" in errors(88)
 
 
-# ungrib
+# ww3
 
 
 def test_schema_ww3():