Updated config/icav2.yaml to include new bundles

umccr · Nov 6, 2024 · 3d31795 · 3d31795
1 parent d6e1ce4
commit 3d31795
Showing 1 changed file with 175 additions and 5 deletions.
diff --git a/config/icav2.yaml b/config/icav2.yaml
@@ -1744,7 +1744,7 @@ bunches:
     bunch_description: |
       Contains the UMCCR dragen-transcriptome-pipeline, validation data and the appropriate reference data for dragen version 4.3.6
     tenant_name: umccr-prod
-    pipeline_path:
+    pipeline_path: 
       workflows/dragen-transcriptome-pipeline/4.3.6/dragen-transcriptome-pipeline__4.3.6.cwl
     pipeline_project_name: pipelines
     bunch_region_id: 1efd315d-6309-4d7e-826b-d3824b0b5acb
@@ -1812,7 +1812,7 @@ bunches:
     bunch_description: |
       Contains the UMCCR dragen-transcriptome-pipeline, and appropriate reference data for dragen version 4.3.6
     tenant_name: umccr-prod
-    pipeline_path:
+    pipeline_path: 
       workflows/dragen-transcriptome-pipeline/4.3.6/dragen-transcriptome-pipeline__4.3.6.cwl
     pipeline_project_name: pipelines
     bunch_region_id: 1efd315d-6309-4d7e-826b-d3824b0b5acb
@@ -2036,13 +2036,13 @@ bunches:
           - dataset_name: dragen_hash_table_hg38_alt_masked_v9_r3_linear_cnv_hla_rna
             dataset_creation_time: '2024-06-21T09:21:42Z'
             dataset_id_hash: a5fe1d2e2fe35737bdbc0871d46878e1
-            
+
   # Validation 4.3.6
   - bunch_name: dragen_somatic_with_germline_pipeline_with_validation_data__4_3_6
     bunch_description: |
       Contains the UMCCR dragen-somatic_with_germline-pipeline, validation data and the appropriate reference data for dragen version 4.3.6
     tenant_name: umccr-prod
-    pipeline_path:
+    pipeline_path: 
       workflows/dragen-somatic-with-germline-pipeline/4.3.6/dragen-somatic-with-germline-pipeline__4.3.6.cwl
     pipeline_project_name: pipelines
     bunch_region_id: 1efd315d-6309-4d7e-826b-d3824b0b5acb
@@ -2104,7 +2104,7 @@ bunches:
     bunch_description: |
       Contains the UMCCR dragen-somatic_with_germline-pipeline, and the appropriate reference data for dragen version 4.3.6
     tenant_name: umccr-prod
-    pipeline_path:
+    pipeline_path: 
       workflows/dragen-somatic-with-germline-pipeline/4.3.6/dragen-somatic-with-germline-pipeline__4.3.6.cwl
     pipeline_project_name: pipelines
     bunch_region_id: 1efd315d-6309-4d7e-826b-d3824b0b5acb
@@ -4844,3 +4844,173 @@ bundles:
       - development
       - staging
       - production
+  - bundle_name: dragen_transcriptome_pipeline_with_validation_data__4_3_6__20241106102659
+    bundle_description: 'This bundle has been generated by the release of workflows/dragen-transcriptome-pipeline/4.3.6/dragen-transcriptome-pipeline__4.3.6.cwl.
+      The pipeline can be found at https://github.com/umccr/cwl-ica/releases/tag/dragen-transcriptome-pipeline/4.3.6__20241106102659.  '
+    bundle_version: v10_r4__20241106102659
+    bundle_version_description: Bundle version description is currently redundant
+      while we cannot append versions to bundles. Regardless - the bunch version is
+      v10_r4
+    bundle_region_id: 1efd315d-6309-4d7e-826b-d3824b0b5acb
+    bundle_region_city_name: Sydney
+    tenant_name: umccr-prod
+    pipeline_path: 
+      workflows/dragen-transcriptome-pipeline/4.3.6/dragen-transcriptome-pipeline__4.3.6.cwl
+    pipeline_name: dragen-transcriptome-pipeline
+    pipeline_version: 4.3.6
+    pipeline_release_url: 
+      https://github.com/umccr/cwl-ica/releases/tag/dragen-transcriptome-pipeline/4.3.6__20241106102659
+    pipeline_commit_id: dragen-transcriptome-pipeline/4.3.6__20241106102659
+    pipeline_checksum: c9e823dbdf406f61e221a4eee400a8f4
+    pipeline_project_id: 5844391a-69db-4b52-86b5-6a0d55c2386f
+    bundle_creation_time: '2024-11-06T10:29:37Z'
+    bundle_release_status: draft
+    bunch_name: dragen_transcriptome_pipeline_with_validation_data__4_3_6
+    bunch_version: v10_r4
+    bunch_datasets:
+      - dataset_name: dragen_hash_table_chm13_v2_v10_r4_graph_cnv_hla_rna
+        dataset_creation_time: '2024-11-04T02:05:03Z'
+        dataset_id_hash: 9511ca5eb8a31b30dd4ee8d80d83cb93
+      - dataset_name: dragen_hash_table_chm13_v2_v10_r4_linear_cnv_hla_rna_methylated_combined
+        dataset_creation_time: '2024-11-05T23:16:55Z'
+        dataset_id_hash: f62a6eb3655012f0f01bb3372d0e7029
+      - dataset_name: dragen_hash_table_hg38_alt_masked_v10_r4_graph_cnv_hla_rna
+        dataset_creation_time: '2024-11-04T01:55:11Z'
+        dataset_id_hash: d6ac5cf3214df27d63a634cbe725ebea
+      - dataset_name: dragen_hash_table_hg38_alt_masked_v10_r4_linear_cnv_hla_rna_methylated_combined
+        dataset_creation_time: '2024-11-05T23:19:50Z'
+        dataset_id_hash: e3d80dec2012c2e65627b68ee9a07293
+      - dataset_name: hg38_fasta
+        dataset_creation_time: '2024-06-21T11:31:50Z'
+        dataset_id_hash: 5f129b14aca5b4a7fda902590b15abc2
+      - dataset_name: arriba_2_4_0
+        dataset_creation_time: '2024-06-21T11:31:26Z'
+        dataset_id_hash: 8695cf0a98c5cda5726f67d4922da67f
+      - dataset_name: hg38_v39_gencode_annotation
+        dataset_creation_time: '2024-07-08T01:23:37Z'
+        dataset_id_hash: 7e88d10c15bfc88ee2e9527962c63984
+      - dataset_name: wts_validation_fastq__SBJ00480
+        dataset_creation_time: '2024-06-21T09:41:15Z'
+        dataset_id_hash: c8b8bdc7e384aaa470b12992ce196693
+      - dataset_name: wts_validation_fastq__SBJ00028
+        dataset_creation_time: '2024-06-21T09:42:31Z'
+        dataset_id_hash: fa76e6ca3a0fb0be2bf41840a7aeeb01
+      - dataset_name: wts_validation_fastq__SBJ00061
+        dataset_creation_time: '2024-06-21T09:42:54Z'
+        dataset_id_hash: 63ee438354c347b05218b9bddc53d936
+      - dataset_name: wts_validation_fastq__SBJ00188
+        dataset_creation_time: '2024-06-21T09:43:11Z'
+        dataset_id_hash: 401d12d90e00db19918e5c9ce13a3da0
+      - dataset_name: wts_validation_fastq__SBJ00199
+        dataset_creation_time: '2024-06-21T09:49:27Z'
+        dataset_id_hash: b95ac04c7e3c03a8b1868a4571d23d5f
+      - dataset_name: wts_validation_fastq__SBJ00236
+        dataset_creation_time: '2024-06-21T09:49:54Z'
+        dataset_id_hash: f084081c52ddda14328294d7bb7f13f4
+      - dataset_name: wts_validation_fastq__SBJ00238
+        dataset_creation_time: '2024-06-21T09:50:29Z'
+        dataset_id_hash: ba04ff08acbfbd1c17f1aadc0e8b3cf5
+    bundle_id: f23b0978-e6d5-44da-b601-398fcc0660d6
+    bundle_data_ids:
+      - fil.523d8dcc66b443987ade08dcf793071e
+      - fil.046e468bff4240486a6a08dcfd053b95
+      - fil.066636f433c441317b4708dcf793071e
+      - fil.030e1b16b3aa4a2d6a2a08dcfd053b95
+      - fil.33b0c303aa2a44efda7008dc8578d1bb
+      - fil.8ab696eccee945064fe608dc9159afed
+      - fil.8950646b2bcf4137dac908dc8578d1bb
+      - fil.361af4dcff7840b5dab808dc8578d1bb
+      - fil.e956bc1d6e124433503f08dc9159afed
+      - fil.962f7248f6bb4d4b9b1f08dc9833b59f
+      - fil.00db7f575e3c4741766608dc8682e79a
+      - fil.848678f252004cae726508dc8578d1b7
+      - fil.e47895b2674b40cf727508dc8578d1b7
+      - fil.f7b97fcf876b4409727608dc8578d1b7
+      - fil.ad6640db600e44e1727a08dc8578d1b7
+      - fil.6e3e68b7fc8b48ef76a908dc8682e79a
+      - fil.25ae81b4f33146b2769708dc8682e79a
+      - fil.dc806da29f02402076aa08dc8682e79a
+      - fil.8ed5724bce234ff276ad08dc8682e79a
+      - fil.2c3073bee29c47ea76ae08dc8682e79a
+      - fil.a191c268b58b414972ae08dc8578d1b7
+      - fil.f4d61a69d418416a76af08dc8682e79a
+      - fil.554ab8b39c49488a76b208dc8682e79a
+      - fil.728b7d6332dd4d2e72af08dc8578d1b7
+    bundle_pipeline_id: c309cddb-bb49-4f96-926e-6917ef0b18d6
+    bundle_url: 
+      https://ica.illumina.com/ica/bundles/f23b0978-e6d5-44da-b601-398fcc0660d6/bundleDetails
+    bundle_categories:
+      - wts
+      - somatic
+      - validation
+      - secondary-analysis
+    projects:
+      - development
+      - staging
+  - bundle_name: dragen_transcriptome_pipeline_prod__4_3_6__20241106102659
+    bundle_description: 'This bundle has been generated by the release of workflows/dragen-transcriptome-pipeline/4.3.6/dragen-transcriptome-pipeline__4.3.6.cwl.
+      The pipeline can be found at https://github.com/umccr/cwl-ica/releases/tag/dragen-transcriptome-pipeline/4.3.6__20241106102659.  '
+    bundle_version: v10_r4__20241106102659
+    bundle_version_description: Bundle version description is currently redundant
+      while we cannot append versions to bundles. Regardless - the bunch version is
+      v10_r4
+    bundle_region_id: 1efd315d-6309-4d7e-826b-d3824b0b5acb
+    bundle_region_city_name: Sydney
+    tenant_name: umccr-prod
+    pipeline_path: 
+      workflows/dragen-transcriptome-pipeline/4.3.6/dragen-transcriptome-pipeline__4.3.6.cwl
+    pipeline_name: dragen-transcriptome-pipeline
+    pipeline_version: 4.3.6
+    pipeline_release_url: 
+      https://github.com/umccr/cwl-ica/releases/tag/dragen-transcriptome-pipeline/4.3.6__20241106102659
+    pipeline_commit_id: dragen-transcriptome-pipeline/4.3.6__20241106102659
+    pipeline_checksum: c9e823dbdf406f61e221a4eee400a8f4
+    pipeline_project_id: 5844391a-69db-4b52-86b5-6a0d55c2386f
+    bundle_creation_time: '2024-11-06T10:34:00Z'
+    bundle_release_status: draft
+    bunch_name: dragen_transcriptome_pipeline_prod__4_3_6
+    bunch_version: v10_r4
+    bunch_datasets:
+      - dataset_name: dragen_hash_table_chm13_v2_v10_r4_graph_cnv_hla_rna
+        dataset_creation_time: '2024-11-04T02:05:03Z'
+        dataset_id_hash: 9511ca5eb8a31b30dd4ee8d80d83cb93
+      - dataset_name: dragen_hash_table_chm13_v2_v10_r4_linear_cnv_hla_rna_methylated_combined
+        dataset_creation_time: '2024-11-05T23:16:55Z'
+        dataset_id_hash: f62a6eb3655012f0f01bb3372d0e7029
+      - dataset_name: dragen_hash_table_hg38_alt_masked_v10_r4_graph_cnv_hla_rna
+        dataset_creation_time: '2024-11-04T01:55:11Z'
+        dataset_id_hash: d6ac5cf3214df27d63a634cbe725ebea
+      - dataset_name: dragen_hash_table_hg38_alt_masked_v10_r4_linear_cnv_hla_rna_methylated_combined
+        dataset_creation_time: '2024-11-05T23:19:50Z'
+        dataset_id_hash: e3d80dec2012c2e65627b68ee9a07293
+      - dataset_name: hg38_fasta
+        dataset_creation_time: '2024-06-21T11:31:50Z'
+        dataset_id_hash: 5f129b14aca5b4a7fda902590b15abc2
+      - dataset_name: arriba_2_4_0
+        dataset_creation_time: '2024-06-21T11:31:26Z'
+        dataset_id_hash: 8695cf0a98c5cda5726f67d4922da67f
+      - dataset_name: hg38_v39_gencode_annotation
+        dataset_creation_time: '2024-07-08T01:23:37Z'
+        dataset_id_hash: 7e88d10c15bfc88ee2e9527962c63984
+    bundle_id: b5da4efb-449f-4277-bfdd-35251eaac849
+    bundle_data_ids:
+      - fil.523d8dcc66b443987ade08dcf793071e
+      - fil.046e468bff4240486a6a08dcfd053b95
+      - fil.066636f433c441317b4708dcf793071e
+      - fil.030e1b16b3aa4a2d6a2a08dcfd053b95
+      - fil.33b0c303aa2a44efda7008dc8578d1bb
+      - fil.8ab696eccee945064fe608dc9159afed
+      - fil.8950646b2bcf4137dac908dc8578d1bb
+      - fil.361af4dcff7840b5dab808dc8578d1bb
+      - fil.e956bc1d6e124433503f08dc9159afed
+      - fil.962f7248f6bb4d4b9b1f08dc9833b59f
+    bundle_pipeline_id: c309cddb-bb49-4f96-926e-6917ef0b18d6
+    bundle_url: 
+      https://ica.illumina.com/ica/bundles/b5da4efb-449f-4277-bfdd-35251eaac849/bundleDetails
+    bundle_categories:
+      - wts
+      - somatic
+      - production
+      - secondary-analysis
+    projects:
+      - production