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Add FASTQ summary, fix colours, handle RNAsum v1 #17

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merged 8 commits into from
Aug 6, 2024
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seqrunsum:

  • add FASTQ summary section
    • reads the fastq_list.csv file from the bcl_convert outputs and confirms that it has the same contents as the direct GDS list
    • outputs FASTQ file sizes
  • recycle colours based on sbj count
  • remove Quality column from tables since it messes up duplicate libs
  • disable rds write
  • fix CLI render params

alignqc:

  • include index + illumina_id info
  • include fq1 + fq2
  • Lane -> lane

meta:

@pdiakumis pdiakumis merged commit c6a2245 into main Aug 6, 2024
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@pdiakumis pdiakumis deleted the seqrunsum_cli branch August 6, 2024 01:54
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Handle RNAsum v1 renamed keys
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