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@vincelhx
vincelhx committed Nov 14, 2024
1 parent ca2e313 commit 871ac11
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96 changes: 48 additions & 48 deletions .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -15,79 +15,79 @@ jobs:

steps:
# Checkout the code
- name: Checkout code
uses: actions/checkout@v4
- name: Checkout code
uses: actions/checkout@v4

- uses: mamba-org/setup-micromamba@v1
with:
micromamba-version: "1.5.9-1" # any version from https://github.com/mamba-org/micromamba-releases
channels: tcevaer, conda-forge
init-shell: bash
post-cleanup: "all"
- uses: mamba-org/setup-micromamba@v1
with:
micromamba-version: "1.5.9-1" # any version from https://github.com/mamba-org/micromamba-releases
channels: tcevaer, conda-forge
init-shell: bash
post-cleanup: "all"

- name: Configure Conda channel priority to disabled
run: |
conda config --set channel_priority disabled
- name: Configure Conda channel priority to disabled
run: |
conda config --set channel_priority disabled
- name: Create environment and install tools
run: micromamba create -n grdwind_env pytest conda-build boa python=3.10 -y
- name: Create environment and install tools
run: micromamba create -n grdwind_env pytest conda-build boa python=3.10 -y

- name: Build package
run: |
cd recipe
eval "$(micromamba shell hook --shell bash)"
micromamba activate grdwind_env
conda mambabuild .
- name: Build package
run: |
cd recipe
eval "$(micromamba shell hook --shell bash)"
micromamba activate grdwind_env
conda mambabuild .
# Install the built package into the environment
- name: Install the built package
run: |
eval "$(micromamba shell hook --shell bash)"
micromamba activate grdwind_env
conda install --use-local grdwindinversion -y
# Install the built package into the environment
- name: Install the built package
run: |
eval "$(micromamba shell hook --shell bash)"
micromamba activate grdwind_env
conda install --use-local grdwindinversion -y
# Cache the test data if previously downloaded (up to 10 GB limit for the cache)
# WARNING : modify the key if the data is modified !!
- name: Cache test data
uses: actions/cache@v4
id: cache
with:
path: ./test_data
key: test-data-v3
restore-keys: test-data-v3
# Cache the test data if previously downloaded (up to 10 GB limit for the cache)
# WARNING : modify the key if the data is modified !!
- name: Cache test data
uses: actions/cache@v4
id: cache
with:
path: ./test_data
key: test-data-v3
restore-keys: test-data-v3

# Download test data if not already cached
- name: Download test data
if: steps.cache.outputs.cache-hit != 'true' # Only download if cache miss
run: |
# Download test data if not already cached
- name: Download test data
if: steps.cache.outputs.cache-hit != 'true' # Only download if cache miss
run: |
mkdir -p ./test_data/
wget https://cloud.ifremer.fr/index.php/s/ExLQ2TnYAqozPWE/download -O /tmp/ecmwf.zip
unzip /tmp/ecmwf.zip -d ./test_data/
wget https://cloud.ifremer.fr/index.php/s/kRgdOOPsjoZieZR/download -O /tmp/l1.zip
unzip /tmp/l1.zip -d ./test_data/
timeout-minutes: 200 # Adjust depending on the size of your data
timeout-minutes: 200 # Adjust depending on the size of your data

# Set up xsar configuration
- name: Setup xsar configuration
run: |
# Set up xsar configuration
- name: Setup xsar configuration
run: |
mkdir -p ~/.xsar
echo "data_dir: /tmp" > ~/.xsar/config.yaml
echo "auxiliary_dir: ./test_data/auxiliary" >> ~/.xsar/config.yaml
echo "path_dataframe_aux: ./test_data/auxiliary/active_aux.csv" >> ~/.xsar/config.yaml
# Set up grdwindinversion configuration
- name: Setup grdwindinversion configuration
run: |
# Set up grdwindinversion configuration
- name: Setup grdwindinversion configuration
run: |
mkdir -p ~/.grdwindinversion
echo "'ecmwf_0100_1h': ./test_data/ECMWF/forecast/hourly/0100deg/netcdf_light/%Y/%j/ECMWF_FORECAST_0100_%Y%m%d%H%M_10U_10V.nc" > ~/.grdwindinversion/data_config.yaml
echo "'ecmwf_0125_1h': ./test_data/ECMWF/0.125deg/1h/forecasts/%Y/%j/ecmwf_%Y%m%d%H%M.nc" >> ~/.grdwindinversion/data_config.yaml
#echo "'nc_luts_path': ./test_data/GMFS/nc_luts" >> ~/.grdwindinversion/data_config.yaml
#echo "'lut_cmod7_path': './test_data/GMFS/v1.6/GMF_cmod7_official/cmod7_and_python_script'" >> ~/.grdwindinversion/data_config.yaml
#echo "'lut_ms1ahw_path': './test_data/GMFS/v1.6/GMF_cmodms1ahw'" >> ~/.grdwindinversion/data_config.yaml
# Run the tests
- name: Run tests
run: |
# Run the tests
- name: Run tests
run: |
eval "$(micromamba shell hook --shell bash)"
micromamba activate grdwind_env
pytest
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2 changes: 1 addition & 1 deletion grdwindinversion/inversion.py
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Original file line number Diff line number Diff line change
Expand Up @@ -797,7 +797,7 @@ def preprocess(filename, outdir, config_path, overwrite=False, add_gradientsfeat
xr_dataset.sigma0.sel(pol=crosspol), xr_dataset.incidence, model=model_cross)
if config["apply_flattening"]:
xr_dataset = xr_dataset.assign(nesz_cross_flattened=(
['line', 'sample'], windspeed.nesz_flattening(xr_dataset.nesz.sel(pol=crosspol), xr_dataset.incidence)))
['line', 'sample'], windspeed.nesz_flattening(xr_dataset.nesz.sel(pol=crosspol), xr_dataset.incidence).data))
xr_dataset['nesz_cross_flattened'].attrs[
"comment"] = 'nesz has been flattened using windspeed.nesz_flattening'
# dsig
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