Breaking: refactor #32
CI.yml
on: pull_request
Documentation
18m 53s
Matrix: test
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11 errors
Julia 1 - ubuntu-latest - x64 - pull_request
Process completed with exit code 1.
|
Documentation:
../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L44
failed to run `@example` block in src/EEGstats.md:21-26
```@example eeg
formula = @formula(0 ~ 1 + condition)
models = map((d, ev) -> (fit(UnfoldModel, formula, DataFrame(ev), d, ), ev.subject[1]),
eachslice(data; dims=3),
groupby(events, :subject))
```
exception =
LoadError: UndefVarError: `@formula` not defined in `Main.__atexample__named__eeg`
Suggestion: check for spelling errors or missing imports.
Hint: a global variable of this name may be made accessible by importing StatsModels in the current active module Main
Hint: a global variable of this name may be made accessible by importing Unfold in the current active module Main
Hint: a global variable of this name may be made accessible by importing MixedModels in the current active module Main
Hint: a global variable of this name may be made accessible by importing UnfoldSim in the current active module Main
Stacktrace:
[1] top-level scope
@ :0
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801
in expression starting at EEGstats.md:22
|
Documentation:
../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L44
failed to run `@example` block in src/EEGstats.md:30-38
```@example eeg
function add_subject!(df, s)
df[!, :subject] .= s
return df
end
allEffects = map((x) -> (effects(Dict(:condition => ["car", "face"]), x[1]), x[2]) |> (x) -> add_subject!(x[1], x[2]), models) |> e -> reduce(vcat, e)
plot_erp(allEffects; mapping=(color=:condition, group=:subject))
```
exception =
UndefVarError: `models` not defined in `Main.__atexample__named__eeg`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ EEGstats.md:35
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801
|
Documentation:
../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L44
failed to run `@example` block in src/EEGstats.md:42-45
```@example eeg
allCoefs = map(m -> (coeftable(m[1]), m[2]) |> (x) -> add_subject!(x[1], x[2]), models) |> e -> reduce(vcat, e)
plot_erp(allCoefs; mapping=(group=:subject, col=:coefname))
```
exception =
UndefVarError: `models` not defined in `Main.__atexample__named__eeg`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ EEGstats.md:43
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801
|
Documentation:
../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L44
failed to run `@example` block in src/EEGstats.md:49-53
```@example eeg
faceCoefs = allCoefs |> x -> subset(x, :coefname => x -> x .== "condition: face")
erpMatrix = unstack(faceCoefs, :subject, :time, :estimate) |> x -> Matrix(x[:, 2:end])' |> collect
summary(erpMatrix)
```
exception =
UndefVarError: `allCoefs` not defined in `Main.__atexample__named__eeg`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ EEGstats.md:50
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801
|
Documentation:
../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L44
failed to run `@example` block in src/EEGstats.md:57-60
```@example eeg
pvals = clusterdepth(erpMatrix; τ=quantile(TDist(n_subjects - 1), 0.95), nperm=5000);
nothing #hide
```
exception =
UndefVarError: `quantile` not defined in `Main.__atexample__named__eeg`
Suggestion: check for spelling errors or missing imports.
Hint: a global variable of this name may be made accessible by importing Statistics in the current active module Main
Hint: a global variable of this name may be made accessible by importing StatsBase in the current active module Main
Hint: a global variable of this name may be made accessible by importing Distributions in the current active module Main
Stacktrace:
[1] top-level scope
@ EEGstats.md:58
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801
|
Documentation:
../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L44
failed to run `@example` block in src/EEGstats.md:69-74
```@example eeg
faceERP = groupby(faceCoefs, [:time, :coefname]) |>
x -> combine(x, :estimate => mean => :estimate,
:estimate => std => :stderror);
nothing #hide
```
exception =
UndefVarError: `groupby` not defined in `Main.__atexample__named__eeg`
Suggestion: check for spelling errors or missing imports.
Hint: a global variable of this name may be made accessible by importing DataFrames in the current active module Main
Hint: a global variable of this name may be made accessible by importing IterTools in the current active module Main
Stacktrace:
[1] top-level scope
@ EEGstats.md:70
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801
|
Documentation:
../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L44
failed to run `@example` block in src/EEGstats.md:78-81
```@example eeg
pvalDF = ClusterDepth.cluster(pvals .<= 0.05) |> x -> DataFrame(:from => x[1] ./ 250, :to => (x[1] .+ x[2]) ./ 250, :coefname => "condition: face")
plot_erp(faceERP; stderror=true, pvalue=pvalDF)
```
exception =
UndefVarError: `ClusterDepth` not defined in `Main.__atexample__named__eeg`
Suggestion: check for spelling errors or missing imports.
Hint: ClusterDepth is loaded but not imported in the active module Main.
Stacktrace:
[1] top-level scope
@ EEGstats.md:79
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801
|
Documentation:
../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L44
failed to run `@example` block in src/generated/tutorial/lmm_clusterdepth.md:7-60
```@example lmm_clusterdepth
using UnfoldSim
using Unfold
using MixedModelsPermutations, ClusterDepth # both necessary to activate correct extension!
using UnfoldStats
using StatsModels
using Random
using MixedModels
srate = 25
design = MultiSubjectDesign(;
n_subjects = 30,
n_items = 40,
items_between = Dict(:stimtype => ["car", "face"]),
)
#both_within = Dict(:condition=>["scrambled","intact"]))
contrasts = Dict(:stimtype => DummyCoding())
p1 = MixedModelComponent(;
basis = UnfoldSim.p100(; sfreq = srate),
formula = @formula(dv ~ 1 + (1 | subject) + (1 | item)),
β = [5.0],
σs = Dict(:subject => [0.0], :item => [0.0]),
contrasts = contrasts,
);
n1 = MixedModelComponent(;
basis = UnfoldSim.n170(; sfreq = srate),
formula = @formula(dv ~ 1 + stimtype + (1 + stimtype | subject) + (1 | item)),
β = [1.0, 4], # n170-basis is negative
σs = Dict(:subject => [2.0, 0.25], :item => [0.25]),
contrasts = contrasts,
);
p3 = MixedModelComponent(;
basis = UnfoldSim.p300(; sfreq = srate),
formula = @formula(dv ~ 1 + (1 | subject) + (1 + stimtype | item)),
β = [4.0],
σs = Dict(:subject => [1.0], :item => [0.5, 2]),
contrasts = contrasts,
);
data_e, events = UnfoldSim.simulate(
design,
[p1, n1, p3],
UniformOnset(srate * 2, 10),
PinkNoise(; noiselevel = 1);
return_epoched = true,
) # 18
times = range(-0.1, 0.5, length = size(data_e, 1))
data_e = reshape(data_e, 1, size(data_e, 1), :)
#events.latency .+= repeat(range(0,length=size(data,2),step=size(data,1)),inner=size(events[events.subject.=="S01",:],1))
```
exception =
ArgumentError: Package MixedModels not found in current path.
- Run `import Pkg; Pkg.add("MixedModels")` to install the MixedModels package.
Stacktrace:
[1] macro expansion
@ ./loading.jl:2296 [inlined]
[2] macro expansion
@ ./lock.jl:273 [inlined]
[3] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2271
[4] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[5] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[6] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2260
[7] eval
@ ./boot.jl:430 [inlined]
[8] #60
@ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined]
[9] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[10] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802
[11] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[12] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[13] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[14] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[15] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801
|
Documentation:
../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L44
failed to run `@example` block in src/generated/tutorial/lmm_clusterdepth.md:64-77
```@example lmm_clusterdepth
m = fit(
UnfoldModel,
[
Any => (
@formula(0 ~ 1 + stimtype + (1 + stimtype | item) + (1 + stimtype | subject)),
times,
),
],
events,
data_e,
);
nothing #hide
```
exception =
UndefVarError: `times` not defined in `Main.__atexample__named__lmm_clusterdepth`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ lmm_clusterdepth.md:65
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801
|
Documentation:
../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L44
failed to run `@example` block in src/generated/tutorial/lmm_clusterdepth.md:81-91
```@example lmm_clusterdepth
coefficient = 2
pvalues(
MersenneTwister(1),
m,
data_e,
coefficient;
n_permutations = 10,
clusterforming_threshold = 1.8,
)
```
exception =
UndefVarError: `m` not defined in `Main.__atexample__named__lmm_clusterdepth`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ lmm_clusterdepth.md:83
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801
|