Assigns unique labels to contiguous sets of pixels in binary images (masks). The output images are tiled TIFFs.
This plugin is available on DockerHub from the WIPP organization
docker pull wipp/wipp-mask-labeling-plugin
docker run \
-v "path/to/input/data/folder":/data/inputs \
-v "path/to/output/folder":/data/outputs \
wipp-image-mask-labeling-plugin \
--inputImages /data/inputs/"inputCollectionTiledFolder"
--output /data/outputs
--connectedness FOUR_CONNECTED