Use volume mounts for input/output of data

[carlosgjs]

Using volumes is required for the container to read data from the host system and write the results out. Changes:

• Use ENTRYPOINT to ensure the container always runs the script (CMD sets overridable arguments)
• Split/two-stage the copy of the code and the calls to install_local to make builds faster when changing the code.
• Add run_container.sh script for making it easy to run the container with the right volume mounts.

Example test to verify parameters get passed correctly:

./run_container.sh ./data-raw ./output multisession 8

INFO [2025-02-02 01:20:25] Computing thermal limits for each species using 8 workers and a 'multisession' parallelization plan.

And output generated in the host machine: ./output/res_final.rds

Issue: #61

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 0.80%. Comparing base (bfd269a) to head (29e2a5b).
Report is 1 commits behind head on main.

Additional details and impacted files

@@          Coverage Diff          @@
##            main     #67   +/-   ##
=====================================
  Coverage   0.80%   0.80%           
=====================================
  Files          6       6           
  Lines        124     124           
=====================================
  Hits           1       1           
  Misses       123     123           

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