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vdemichev authored Oct 16, 2024
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Expand Up @@ -72,7 +72,7 @@ Using DIA-NN to process Slice-PASEF data: **Slice-PASEF: fragmenting all ions fo

On **Windows**, download the .exe installer and run it. Make sure not to run the installer from a network drive. It is recommended to install DIA-NN into the default folder suggested by the installer. Alternatively, just unpack the .binaries.zip archive to a location of your choice.

On **Linux**, download and unpack the .Linux.zip file. The Linux version of DIA-NN is generated on Linux Mint 21.2, and the target system must have the standard libraries that are at least as recent. There is no such requirement, however, if you make a Docker or Apptainer/Singularity container image. To generate either container, we recommend starting with the latest debian docker image - in this case you only need to install `sudo apt install libgomp1` before you can run DIA-NN in it. For the best performance, use mimalloc with dynamic override as described here https://github.com/microsoft/mimalloc.
On **Linux**, download and unpack the .Linux.zip file. The Linux version of DIA-NN is generated on Linux Mint 21.2, and the target system must have the standard libraries that are at least as recent. There is no such requirement, however, if you make a Docker or Apptainer/Singularity container image. To generate either container, we recommend starting with the latest debian docker image - in this case you only need to install `sudo apt install libgomp1` before you can run DIA-NN in it. Please also see the excellent detailed [guide](https://github.com/vdemichev/DiaNN/issues/1202#issuecomment-2417108281) by Roger Olivella. For the best performance, use mimalloc with dynamic override as described here https://github.com/microsoft/mimalloc.

It is also possible to run DIA-NN on Linux using **Wine** 6.8 or later.

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