#314 PR version

vscentrum · May 24, 2024 · 309cfa9 · 309cfa9
1 parent 1198488
commit 309cfa9
Show file tree

Hide file tree

Showing 6 changed files with 0 additions and 102 deletions.
diff --git a/314_napari_microsam/affogato.eb b/314_napari_microsam/affogato.eb
@@ -12,16 +12,6 @@ source_urls = ['https://github.com/constantinpape/affogato/archive/']
 sources = ['%(version)s.tar.gz']
 checksums = ['ad3bb1aca50ce9311d4e88e97e701237bce94faa6e79460f0bc2d2061f1484d2']
 
-#DEPS:
-# - boost-cpp OK
-# - cmake OK 
-# - compilers ?
-# - scipy OK
-# - h5py OK
-# - vigra OK
-# - xtensor>=0.21,<0.22 OK
-# - xtensor-python>=0.24,<0.25 OK
-
 builddependencies = [('CMake', '3.26.3')]
 
 dependencies = [

diff --git a/314_napari_microsam/elf.eb b/314_napari_microsam/elf.eb
@@ -8,11 +8,6 @@ description = "Utils and convenience functions for large-scale bio-image analysi
 
 toolchain = {'name': 'foss', 'version': '2023a'}
 
-# intern 1.4.1 requires nose2, which is not installed. OK exts
-# motile 0.2.1 requires ilpy, which is not installed. ok exts
-# motile 0.2.1 requires structsvm, which is not installed.
-# ilpy missing scip https://scipopt.org/index.php#about
-
 builddependencies = [
     ('scikit-build', '0.17.6'),
     ('CMake', '3.26.3'),

diff --git a/314_napari_microsam/napari_microsam-1.0.1.eb b/314_napari_microsam/napari_microsam-1.0.1.eb
@@ -8,19 +8,6 @@ description = "Tools for segmentation and tracking in microscopy build on top of
 
 toolchain = {'name': 'foss', 'version': '2023a'}
 
-# DEPS:
-# napari OK
-# pyqt OK (in napari)
-# zarr OK 
-# torch OK - torchvision
-# vigra NO (not in EB) -> created OK
-# elf NO -> created OK
-# nifty -> created OK
-# z5py -> created OK
-# python-xxhash OK
-# segment_anything -> created OK
-# torch_em >=0.7.0 -> created OK
-
 dependencies = [
     ('Python', '3.11.3'),
     ('Python-bundle-PyPI', '2023.06'),

diff --git a/314_napari_microsam/nifty.eb b/314_napari_microsam/nifty.eb
@@ -15,16 +15,6 @@ checksums = ['a5fd611463336ba18be828da3154da8828b6486603e2a04f14a4520cb357661a']
 
 builddependencies = [('CMake', '3.26.3')]
 
-# - boost-cpp>=1.63 OK Boost
-# - h5py OK
-# - nlohmann_json OK
-# - scikit-image OK
-# - xtensor>=0.21,<0.22 OK?
-# - xtensor-python>=0.24,<0.25 OK?
-# - vigra OK
-# - z5py -> NO -> zarr insted of this?
-# numpy
-
 dependencies = [
     ('Python', '3.11.3'),
     ('SciPy-bundle', '2023.07'),

diff --git a/314_napari_microsam/torch_em.eb b/314_napari_microsam/torch_em.eb
@@ -9,50 +9,6 @@ other bioimage analysis problems based on pytorch."""
 
 toolchain = {'name': 'foss', 'version': '2023a'}
 
-# DEPS:
-# "torch", OK
-# "h5py" OK
-# - affogato ok created
-# - bioimageio.spec >=0.5.0 OK exts
-# - bioimageio.core >=0.6.0 OK exts
-# - cpuonly ??? no
-# - imagecodecs OK but PR for it will be with empanada-napari
-# - python-elf OK
-# - pytorch >=2.0 OK in torchvision
-# - tensorboard OK
-# - tifffile OK exts
-# - torchvision OK
-# - tqdm OK
-# - kornia OK exts
-# bioimageio-core 0.6.5 requires fire, ok exts
-# bioimageio-core 0.6.5 requires loguru ok exts
-# bioimageio-core 0.6.5 requires pydantic, OK
-# bioimageio-core 0.6.5 requires pydantic-settings, ok exts
-# bioimageio-core 0.6.5 requires python-dotenv, ok exts
-# bioimageio-core 0.6.5 requires ruyaml, ok exts
-# bioimageio-core 0.6.5 requires xarray, OK
-# bioimageio-spec 0.5.2.post5 requires annotated-types, ok exts
-# bioimageio-spec 0.5.2.post5 requires email-validator, ok exts
-# bioimageio-spec 0.5.2.post5 requires loguru, ok exts
-# bioimageio-spec 0.5.2.post5 requires pydantic, OK
-# bioimageio-spec 0.5.2.post5 requires pydantic-settings, ok exts
-# bioimageio-spec 0.5.2.post5 requires python-dotenv, ok exts
-# bioimageio-spec 0.5.2.post5 requires ruyaml, ok exts
-# kornia 0.7.2 requires kornia-rs, ok exts
-# kornia-rs seems ok
-    # maybe needs nasm - ('NASM', '2.16.01')
-    # maybe either gstreamer - ('GStreamer', '1.22.5)
-# hatchling OK
-# email-validator 2.1.1 requires dnspython, ok exts
-# fire 0.6.0 requires termcolor, ok exts
-# bioimageio-spec 0.5.2.post5 has requirement pydantic<3,>=2.6.3, but you have pydantic 2.5.3. -> unpin by preinstallopts
-    # imports to torch_em from bioimageio.spec:
-    # bioimageio.spec.model.v0_5
-    # from bioimageio.spec import save_bioimageio_package
-# skimage -> scikit-image (in elf, nifty)
-    # import skimage.measure
-    # import skimage.segmentation
-
 builddependencies = [
     ('maturin', '1.1.0'),
     ('CMake', '3.26.3'),

diff --git a/314_napari_microsam/z5py.eb b/314_napari_microsam/z5py.eb
@@ -12,26 +12,6 @@ source_urls = ['https://github.com/constantinpape/z5/archive/']
 sources = ['%(version)s.tar.gz']
 checksums = ['76acaeec7203b8d3baec45ccce82cd260dc1893f1516640acec5de6d74c078ef']
 
-# export PY_BIN=$ENV_BIN/python
-# DEPS: 
-#  python OK
-#   - cmake OK
-#   - compilers ?
-#   - bzip2 OK
-#   - lz4-c OK
-#   - xz OK
-#   - zlib OK
-#   - xtensor >=0.24,<0.25 OK
-#   - xtensor-python >=0.26,<0.27 OK
-#   - xsimd >=8,<9 in xtensor OK
-#   - blosc OK
-#   - imageio OK
-#   - nlohmann_json OK
-#   - zarr OK
-#   - h5py OK
-# pybind OK
-# numpy OK
-
 builddependencies = [('CMake', '3.26.3')]
 
 dependencies = [