Update README.md

wanglab-broad · Jul 20, 2024 · e034404 · e034404
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@@ -71,6 +71,8 @@ For the environment, to use .yml file:
 
 - `model.cellcenter_unique`:  cell centers in order of `model.cellid_unique`
 
+If you want to generate mask from points, refer to the notebook [here](./datasets/generate_mask.ipynb).
+
 #### 
 
 #### Analysis on STARmap 2D V1 1020-gene sample
@@ -89,6 +91,7 @@ For the environment, to use .yml file:
 
 
 
+
 #### Time estimation
 
 - Time is dependent on the number of input spots, and potentially the area the DAPI foreground. Currently testing on several samples: