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Update README.md
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acarafat authored Sep 8, 2023
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Expand Up @@ -10,7 +10,8 @@ Extract Ti/Ri oncogenic plasmid based on BEAV output
# Usage
`python3 extract_ti.py [-h] --input INPUT --contiglist CONTIGLIST`

Alternatively, you can submit an SGE_Array job using the wrapper provided in the `SGE_wrapper/run_extract_ti.sh` directory. Use the following command:
Alternatively, you can submit an SGE job using the wrapper provided in the `SGE_wrapper/run_extract_ti.sh` directory. Use the following command:

`./run_extract_ti.sh path/to/BEAV/output/dir`

# Arguments
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