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weisscharlesj · Apr 6, 2024 · 5dd4c59 · 5dd4c59
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diff --git a/_sources/notebooks/chapter_16/chap_16_notebook.ipynb b/_sources/notebooks/chapter_16/chap_16_notebook.ipynb
diff --git a/_sources/notebooks/chapter_16/nglview_experimentation.ipynb b/_sources/notebooks/chapter_16/nglview_experimentation.ipynb
@@ -0,0 +1,98 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": 1,
+   "id": "eea59bbc-da8f-4513-9ec5-7c6fbcf828e0",
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "application/vnd.jupyter.widget-view+json": {
+       "model_id": "9cd3022ba7b440239425bca83e3484e4",
+       "version_major": 2,
+       "version_minor": 0
+      },
+      "text/plain": []
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    }
+   ],
+   "source": [
+    "import nglview as nv"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 2,
+   "id": "99809986-1e91-47d1-867f-0311f6223851",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import Bio\n",
+    "from Bio import PDB, SeqIO, SeqUtils, Align"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 15,
+   "id": "731aa2fd-271d-4baf-b582-690689b0d55a",
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "application/vnd.jupyter.widget-view+json": {
+       "model_id": "fe4f75a6d9e04c32be33f15f9d3cd4d0",
+       "version_major": 2,
+       "version_minor": 0
+      },
+      "text/plain": [
+       "NGLWidget(gui_style='ngl')"
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    }
+   ],
+   "source": [
+    "prot = nv.show_pdbid('1rpy')\n",
+    "prot.clear_representations()\n",
+    "prot.add_representation('cartoon')\n",
+    "prot.add_representation('licorice', selection='ring')\n",
+    "\n",
+    "prot.gui_style = 'ngl'\n",
+    "prot"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "24981c63-162e-4d56-9abc-0acfc137457c",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3 (ipykernel)",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.11.4"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/notebooks/chapter_16/chap_16_notebook.html b/notebooks/chapter_16/chap_16_notebook.html
diff --git a/notebooks/chapter_16/nglview_experimentation.html b/notebooks/chapter_16/nglview_experimentation.html
diff --git a/objects.inv b/objects.inv
diff --git a/searchindex.js b/searchindex.js