CRAN release 0.1.1: fix vignette missing gif

welch-lab · Dec 15, 2023 · 996339f · 996339f
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: CytoSimplex
 Type: Package
 Title: Simplex Visualization of Cell Fate Similarity in Single-Cell Data
-Version: 0.1.0
+Version: 0.1.1
 Authors@R: c(
     person(given = 'Yichen', family = 'Wang', email = '[email protected]', 
            role = c('aut', 'cre'), comment = c(ORCID = "0000-0003-4347-5199")),

diff --git a/NEWS.md b/NEWS.md
@@ -2,3 +2,7 @@
 
 - Initial release version.
 
+## CytoSimplex 0.1.1
+
+- Fix vignette GIF picture linking issue
+
diff --git a/inst/figure/rotating_tetra.gif b/inst/figure/rotating_tetra.gif
diff --git a/vignettes/CytoSimplex.Rmd b/vignettes/CytoSimplex.Rmd
@@ -127,19 +127,15 @@ plotQuaternary(rnaRaw, clusterVar = rnaCluster, vertices = vt.quat,
 
 We have also implemented of GIF image generator that rotates the tetrahedron rounding the z-axis. Note that package `magick` is required for this feature. (<a href="https://cran.r-project.org/package=magick/vignettes/intro.html#Installing_magick" target="_blank">See here for how to install `magick` in detail</a>)
 
-```{R writeGIF, results="hide"}
+```{R writeGIF, eval=FALSE, results="hide"}
 writeQuaternaryGIF(rnaRaw, clusterVar = rnaCluster, vertices = vt.quat, 
                    features = gene.quat, veloGraph = rnaVelo, 
                    gifPath = "rotating_tetra.gif")
 ```
 
 ```{R showGIF, echo = FALSE}
 if (!knitr:::is_latex_output()) {
-  knitr::include_graphics("rotating_tetra.gif")
+  knitr::include_graphics(system.file("figure/rotating_tetra.gif", package = "CytoSimplex"))
 }
 ```
 
-```{R unlinkFile, include=FALSE}
-unlink("rotating_tetra.gif")
-```
-
Original file line number	Diff line number	Diff line change
Expand Up		@@ -2,3 +2,7 @@

		- Initial release version.

		## CytoSimplex 0.1.1

		- Fix vignette GIF picture linking issue