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mokapot v0.6.0
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@wfondrie wfondrie released this 03 Mar 18:25
v0.6.0
94d6b9e

This version contains a few bug fixes, improved tests, and adds support for PepXML files as input.

Added

  • Support for parsing PSMs from PepXML input files.
  • A changelog.

Fixed

  • Parsing a FASTA file previously failed if an entry was not followed by a
    sequence. Now, missing sequences are tolerated and a warning is given instead.
  • When the learned model was worse than the best feature and the lower scores
    were better for the best feature, assigning confidence would fail.
  • Easy access to grouped confidence estimates in the Python API were not working
    due to a typo.
  • Deprecation warnings from Pandas about the regex argument.
  • Sometimes peptides were removed as shared incorrectly when part of a protein
    group.

Changed

  • Refactored and added many new unit and system tests.
  • New pull-requests must now improve or maintain test coverage.
  • Improved error messages.
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