Rendering at commit e6c1e3a

wradlib · Feb 13, 2023 · d5e5ba8 · d5e5ba8
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diff --git a/.dask/config.yaml b/.dask/config.yaml
@@ -0,0 +1,36 @@
+distributed:
+  logging:
+    bokeh: critical
+
+  dashboard:
+    link: /user/{JUPYTERHUB_USER}/proxy/{port}/status
+
+  admin:
+    tick:
+      limit: 5s
+
+kubernetes:
+  worker-name: dask-{JUPYTERHUB_USER}-{uuid}
+  worker-template:
+    metadata:
+    spec:
+      restartPolicy: Never
+      containers:
+      - args:
+          - dask-worker
+          - --nthreads
+          - '2'
+          - --no-bokeh
+          - --memory-limit
+          - 7GB
+          - --death-timeout
+          - '60'
+        image: ${JUPYTER_IMAGE_SPEC}
+        name: dask-worker
+        resources:
+          limits:
+            cpu: "1.75"
+            memory: 7G
+          requests:
+            cpu: "1.75"
+            memory: 7G
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -0,0 +1,190 @@
+name: CI
+env:
+  micromamba_version: 1.3
+
+
+on:
+  push:
+    branches: [ main ]
+  pull_request:
+    branches: [ main ]
+
+  workflow_dispatch:
+
+
+jobs:
+  build_0:
+    name: wradlib notebooks - linux
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -l {0}
+    env:
+      WRADLIB_DATA: ./wradlib-data
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.11"]
+    steps:
+    - name: Cancel Previous Runs
+      uses: styfle/[email protected]
+      with:
+        access_token: ${{ github.token }}
+    - uses: actions/checkout@v3
+      with:
+        fetch-depth: 0
+    - name: Install micromamba environment
+      uses: mamba-org/provision-with-micromamba@main
+      with:
+        environment-name: wradlib-notebooks
+        environment-file: ci/requirements/notebooks.yml
+        extra-specs: |
+          python=${{ matrix.python-version }}
+    - name: Install wradlib
+      run: |
+        git clone https://github.com/wradlib/wradlib.git
+        cd wradlib
+        echo "WRADLIB_TAG=`git name-rev --name-only --tags HEAD`" >> $GITHUB_ENV
+        python -m pip install . --no-deps
+    - name: Install wradlib-data
+      run: |
+        python -m pip install git+https://github.com/wradlib/wradlib-data@pooch
+        mkdir ./wradlib-data
+    - name: Version Info
+      run: |
+        python -c "import wradlib; print(wradlib.version.version)"
+        python -c "import wradlib; print(wradlib.show_versions())"
+    - name: Render with pytest
+      env:
+        WRADLIB_EARTHDATA_BEARER_TOKEN: ${{ secrets.WRADLIB_EARTHDATA_BEARER_TOKEN }}
+      run: |
+        export WRADLIB_DATA=`realpath $WRADLIB_DATA`
+        pytest -n auto --verbose --durations=15 --pyargs notebooks
+    - name: Commit files
+      if: github.event_name == 'push' || github.event_name == 'workflow_dispatch'
+      run: |
+        git config --global user.email "[email protected]"
+        git config --global user.name "wradlib-docs-bot"
+        git checkout --orphan render
+        git add --all .
+        git commit -m "Rendering at commit $GITHUB_SHA"
+    - name: Push changes
+      if: github.event_name == 'push' || github.event_name == 'workflow_dispatch'
+      run: |
+        if [ $WRADLIB_TAG == 'undefined' ]; then
+            BRANCH=devel
+        else
+            BRANCH=$WRADLIB_TAG
+        fi
+        git push https://${{ secrets.GITHUB_TOKEN }}@github.com/wradlib/wradlib-notebooks.git render:$BRANCH -fq
+
+  build_1:
+    name: wradlib notebooks - macosx
+    runs-on: macos-latest
+    defaults:
+      run:
+        shell: bash -l {0}
+    env:
+      WRADLIB_DATA: ./wradlib-data
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.11"]
+    steps:
+    - name: Cancel Previous Runs
+      uses: styfle/[email protected]
+      with:
+        access_token: ${{ github.token }}
+    - uses: actions/checkout@v3
+      with:
+        fetch-depth: 0
+    - name: Install micromamba environment
+      uses: mamba-org/provision-with-micromamba@main
+      with:
+        environment-name: wradlib-notebooks
+        environment-file: ci/requirements/notebooks.yml
+        extra-specs: |
+          python=${{ matrix.python-version }}
+    - name: Install wradlib
+      run: |
+        git clone https://github.com/wradlib/wradlib.git
+        cd wradlib
+        echo "WRADLIB_TAG=`git name-rev --name-only --tags HEAD`" >> $GITHUB_ENV
+        python -m pip install . --no-deps
+    - name: Install wradlib-data
+      run: |
+        python -m pip install git+https://github.com/wradlib/wradlib-data@pooch
+        mkdir ./wradlib-data
+    - name: Version Info
+      run: |
+        python -c "import wradlib; print(wradlib.version.version)"
+        python -c "import wradlib; print(wradlib.show_versions())"
+    - name: Render with pytest
+      env:
+        WRADLIB_EARTHDATA_BEARER_TOKEN: ${{ secrets.WRADLIB_EARTHDATA_BEARER_TOKEN }}
+      run: |
+        export WRADLIB_DATA=`python -c "import os, sys; print(os.path.realpath(sys.argv[1]))" $WRADLIB_DATA`
+        pytest -n auto --verbose --doctest-modules --durations=15 --cov-report xml:coverage.xml --cov=wradlib --pyargs notebooks
+
+  build_2:
+    name: wradlib notebooks - windows
+    runs-on: windows-latest
+    defaults:
+      run:
+        shell: bash -l {0}
+    env:
+      WRADLIB_DATA: ./wradlib-data
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.11"]
+    steps:
+    - name: Cancel Previous Runs
+      uses: styfle/[email protected]
+      with:
+        access_token: ${{ github.token }}
+    - uses: actions/checkout@v3
+      with:
+        fetch-depth: 0
+    - name: Install micromamba environment
+      uses: mamba-org/provision-with-micromamba@main
+      with:
+        environment-name: wradlib-notebooks
+        environment-file: ci/requirements/notebooks.yml
+        extra-specs: |
+          python=${{ matrix.python-version }}
+    - name: Install wradlib
+      run: |
+        git clone https://github.com/wradlib/wradlib.git
+        cd wradlib
+        python -m pip install . --no-deps
+    - name: Install wradlib-data
+      run: |
+        python -m pip install git+https://github.com/wradlib/wradlib-data@pooch
+        mkdir ./wradlib-data
+    - name: Version Info
+      run: |
+        python -c "import wradlib; print(wradlib.version.version)"
+        python -c "import wradlib; print(wradlib.show_versions())"
+    - name: Test with pytest
+      env:
+        WRADLIB_EARTHDATA_BEARER_TOKEN: ${{ secrets.WRADLIB_EARTHDATA_BEARER_TOKEN }}
+      run: |
+        export WRADLIB_DATA=`python -c "import os, sys; print(os.path.realpath(sys.argv[1]))" $WRADLIB_DATA`
+        pytest -n auto --verbose --doctest-modules --durations=15 --cov-report xml:coverage.xml --cov=wradlib --pyargs notebooks
+
+  trigger_rtd:
+    if: github.event_name == 'push' || github.event_name == 'workflow_dispatch'
+    needs: [build_0]
+    name: trigger readthedocs
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -l {0}
+    env:
+      RTD_TOKEN: ${{ secrets.RTD_TOKEN }}
+      RTD_URL: ${{ secrets.RTD_URL }}
+    steps:
+    - name: trigger readthedocs
+      run: |
+        curl -X POST -d "token=$RTD_TOKEN" "$RTD_URL"
diff --git a/.github/workflows/render_notebooks.yml b/.github/workflows/render_notebooks.yml
@@ -0,0 +1,87 @@
+name: Render
+
+on:
+  workflow_dispatch:
+
+
+jobs:
+  build_0:
+    name: wradlib notebooks - linux
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -l {0}
+    env:
+      WRADLIB_DATA: ./wradlib-data
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.11"]
+    steps:
+    - name: Cancel Previous Runs
+      uses: styfle/[email protected]
+      with:
+        access_token: ${{ github.token }}
+    - uses: actions/checkout@v3
+      with:
+        fetch-depth: 0
+    - name: Install micromamba environment
+      uses: mamba-org/provision-with-micromamba@main
+      with:
+        environment-name: wradlib-notebooks
+        environment-file: ci/requirements/notebooks.yml
+        extra-specs: |
+          python=${{ matrix.python-version }}
+    - name: Install wradlib
+      run: |
+        git clone https://github.com/wradlib/wradlib.git
+        cd wradlib
+        echo "WRADLIB_TAG=`git name-rev --name-only --tags HEAD`" >> $GITHUB_ENV
+        python -m pip install . --no-deps
+    - name: Install wradlib-data
+      run: |
+        python -m pip install git+https://github.com/wradlib/wradlib-data@pooch
+        mkdir ./wradlib-data
+    - name: Version Info
+      run: |
+        python -c "import wradlib; print(wradlib.version.version)"
+        python -c "import wradlib; print(wradlib.show_versions())"
+    - name: Render with pytest
+      env:
+        WRADLIB_EARTHDATA_BEARER_TOKEN: ${{ secrets.WRADLIB_EARTHDATA_BEARER_TOKEN }}
+      run: |
+        export WRADLIB_DATA=`realpath $WRADLIB_DATA`
+        pytest -n auto --verbose --durations=15 --pyargs notebooks
+    - name: Commit files
+      if: github.event_name == 'push' || github.event_name == 'workflow_dispatch'
+      run: |
+        git config --global user.email "[email protected]"
+        git config --global user.name "wradlib-docs-bot"
+        git checkout --orphan render
+        git add --all .
+        git commit -m "Rendering at commit $GITHUB_SHA"
+    - name: Push changes
+      if: github.event_name == 'push' || github.event_name == 'workflow_dispatch'
+      run: |
+        if [ $WRADLIB_TAG == 'undefined' ]; then
+            BRANCH=devel
+        else
+            BRANCH=$WRADLIB_TAG
+        fi
+        git push https://${{ secrets.GITHUB_TOKEN }}@github.com/wradlib/wradlib-notebooks.git render:$BRANCH -fq
+
+  trigger_rtd:
+    if: github.event_name == 'workflow_dispatch'
+    needs: [build_0]
+    name: trigger readthedocs
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -l {0}
+    env:
+      RTD_TOKEN: ${{ secrets.RTD_TOKEN }}
+      RTD_URL: ${{ secrets.RTD_URL }}
+    steps:
+    - name: trigger readthedocs
+      run: |
+        curl -X POST -d "token=$RTD_TOKEN" "$RTD_URL"
diff --git a/.gitignore b/.gitignore
@@ -0,0 +1,39 @@
+# Ignore everything
+*
+
+# whitelist notebooks, png and shell
+!*.ipynb
+!*.png
+!*.sh
+
+# whitelist scripts
+!scripts/
+!/scripts/*
+
+# whitelist notebooks
+!notebooks/
+#!/notebooks/**
+
+# whitelist .dask
+!.dask/
+!/.dask/*
+
+# whitelist ci
+!ci/
+
+# whitelist binder
+!binder/
+!/binder/*
+
+# Whitelist root files
+!.gitignore
+!conftest.py
+!README.md
+!LICENSE.txt
+!Welcome_Pangeo.md
+
+# blacklist standard notebook copies
+*-Copy*.ipynb
+
+# blacklist checkpoints
+*checkpoint*
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -0,0 +1,33 @@
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.4.0
+    hooks:
+      - id: trailing-whitespace
+      - id: end-of-file-fixer
+      - id: check-docstring-first
+      - id: check-json
+      - id: check-yaml
+      - id: debug-statements
+      - id: mixed-line-ending
+  - repo: https://github.com/asottile/pyupgrade
+    rev: v3.3.1
+    hooks:
+      - id: pyupgrade
+        args:
+          - '--py38-plus'
+  - repo: https://github.com/kynan/nbstripout
+    rev: 0.6.1
+    hooks:
+      - id: nbstripout
+        args:
+          - '--extra-keys "metadata.kernelspec cell.metadata.tags"'
+  - repo: https://github.com/charliermarsh/ruff-pre-commit
+    rev: 'v0.0.244'
+    hooks:
+      - id: ruff
+        args: [ "--fix" ]
+  - repo: https://github.com/psf/black
+    rev: 23.1.0
+    hooks:
+      - id: black
+      - id: black-jupyter
diff --git a/LICENSE.txt b/LICENSE.txt
@@ -0,0 +1,9 @@
+The MIT License (MIT)
+
+Copyright (c) 2016-2021 wradlib developers
+
+Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.