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1. idemp idemp Public

   Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files

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2. matchclips2 matchclips2 Public

   paired end distance, split reads matching, read depth are used to detect and precisely locate structure variations

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3. matchclips matchclips Public

   Matchclips precisely detects break points of CNVs by matching soft clipped reads using CIGAR and POS information.

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4. sam2psl sam2psl Public

   Convert SAM format to PSL format

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5. rsicnv rsicnv Public

   Detect copy number variations based on read depth of whole genome sequencing

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6. bamrdplot bamrdplot Public

   plot read depth and abnormal pairs at given region

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