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LRSDAY v1.3.1
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@yjx1217 yjx1217 released this 22 Jan 21:05
· 20 commits to master since this release
v1.3.1
76476a4

[1.3.1] - 2019-01-22

Added

  • A script for generated demultiplexed fastq reads based on nanopore's guppy demultiplexing summary file.
  • A script for extracting all read IDs from the input fastq file.
  • A script for calculating the sequence length of each enclosed sequences from the input fasta file.

Changed

  • Software version updates for a number of dependencies. Importantly, nanopolish was bumped up to v0.11.0 to support the new multi-fast5 nanopore reads.
  • Downloading URL updates for testing data due to changes on the EBI data server.
  • Adopting picard tools' new commandline syntax.

Fixed

  • A bug that prevents correct parameter parsing when multiple customized canu parameters are specified.
  • Minor bugs related with deleting intermediate files in special cases.
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