LRSDAY v1.6.0

[1.6.0] - 2019-10-03

Added

• Supports for canu-triobinning assembly mode for phased diploid genome assembly.
• Supports for new alternative long-read-assemblers: Ra and Shasta.
• Supports for new alternative long-read-based polishers: Racon, Medaka, and MarginPolish.
• Supports for new alternative reference-genome-based scaffolder: RaGOO.

Changed

• Better robustness for the dependency installation script.
• Better treatment for identifying mitochondrial contigs when they contain assembly gaps.
• Minor adjustment for a few task-specific directory names.
• Software version updates for a number of dependencies.

Fixed

• A bug that will disrupt long-read-based assembly run when assembler="canu-flye", "canu-wtdbg2" or "canu-smartdenovo" because of deleting a non-existing file.