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Remove node from indexes during GC #191

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@hiddenviewer hiddenviewer commented Nov 1, 2024

What this PR does / why we need it:

Which issue(s) this PR fixes:

Fixes #

Special notes for your reviewer:

Does this PR introduce a user-facing change?:


Additional documentation:


Checklist:

  • Added relevant tests or not required
  • Didn't break anything

Summary by CodeRabbit

Release Notes

  • New Features

    • Introduced new methods for debugging: getTreeByIndex and getTreeByID in multiple classes.
  • Bug Fixes

    • Updated the purge method to ensure proper node removal from all tracking structures.
  • Tests

    • Added new test for verifying garbage collection behavior in DocumentTests.
    • Updated existing tests to utilize new debugging methods for weight checks in TextIntegrationTests.

@hiddenviewer hiddenviewer self-assigned this Nov 1, 2024
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coderabbitai bot commented Nov 1, 2024

Walkthrough

The pull request introduces modifications across several classes, primarily focusing on enhancing debugging capabilities. The checkWeight method has been removed from the CRDTText, RGATreeSplit, and JSONText classes, replaced by two new methods: getTreeByIndex and getTreeByID. These methods allow retrieval of tree structures for debugging purposes. Additionally, the setAttr method in CRDTTextValue has been updated to return a tuple of optional nodes. Changes also include updates to integration tests to reflect these method alterations and the addition of a new unit test for garbage collection behavior.

Changes

File Path Change Summary
Sources/Document/CRDT/CRDTText.swift - Removed: func checkWeight() -> Bool
- Added: func getTreeByIndex() -> SplayTree<CRDTTextValue>
- Added: func getTreeByID() -> LLRBTree<RGATreeSplitNodeID, RGATreeSplitNode<CRDTTextValue>>
- Updated: func setAttr(...) -> (RHTNode?, RHTNode?)
Sources/Document/CRDT/RGATreeSplit.swift - Removed: public func checkWeight() -> Bool
- Added: public func getTreeByIndex() -> SplayTree<T>
- Added: public func getTreeByID() -> LLRBTree<RGATreeSplitNodeID, RGATreeSplitNode<T>>
- Updated: public func purge(...) to delete from treeByIndex and treeByID
Sources/Document/Json/JSONText.swift - Removed: public func checkWeight() -> Bool
- Added: func getTreeByIndex() -> SplayTree<CRDTTextValue>?
- Added: func getTreeByID() -> LLRBTree<RGATreeSplitNodeID, RGATreeSplitNode<CRDTTextValue>>?
Tests/Integration/TextIntegrationTests.swift - Updated: Weight check to use getTreeByIndex()?.checkWeight() instead of checkWeight() in tests.
Tests/Unit/Document/DocumentTests.swift - Added: func test_should_purge_node_from_indexes_during_GC() async throws to verify garbage collection behavior.

Possibly related PRs

  • Apply GCPair to TreeNode, TextNode #174: The changes in this PR involve applying GCPair to TreeNode and TextNode, which relates to the modifications in the CRDTText class that enhance debugging capabilities and involve similar data structures.
  • Fix incorrect indexes in TreeChange #181: This PR addresses incorrect indexes in the TreeChange component, which is relevant to the changes in the CRDTText class that also involve tree structures and their manipulation.

🐇 In the code where trees do grow,
New paths to debug, we now bestow.
With methods fresh, we seek and find,
The weight of nodes left far behind.
A test for garbage, swift and neat,
In our JSON world, we can't be beat! 🌳✨


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codecov bot commented Nov 1, 2024

Codecov Report

Attention: Patch coverage is 75.00000% with 11 lines in your changes missing coverage. Please review.

Project coverage is 45.92%. Comparing base (13ac1a5) to head (8a926d4).

Files with missing lines Patch % Lines
Sources/Document/CRDT/CRDTText.swift 40.00% 3 Missing ⚠️
Sources/Document/CRDT/RGATreeSplit.swift 57.14% 3 Missing ⚠️
Sources/Document/Json/JSONText.swift 40.00% 3 Missing ⚠️
Tests/Integration/TextIntegrationTests.swift 0.00% 2 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #191      +/-   ##
==========================================
+ Coverage   45.85%   45.92%   +0.07%     
==========================================
  Files         105      105              
  Lines       26778    26814      +36     
==========================================
+ Hits        12278    12314      +36     
  Misses      14500    14500              

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

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Actionable comments posted: 1

🧹 Outside diff range and nitpick comments (4)
Sources/Document/Json/JSONText.swift (1)

250-260: LGTM! Consider enhancing the debugging documentation.

The new debugging methods are well-structured and appropriately scoped. They provide essential visibility into the tree structures which is valuable for garbage collection debugging.

Consider enhancing the documentation to include:

  • Example usage scenarios
  • Return value interpretation guidelines
  • When nil might be returned
     /**
      * `getTreeByIndex` returns the tree by index for debugging.
+     *
+     * Used primarily for debugging garbage collection behavior:
+     * - Returns nil if text is not initialized
+     * - Returns the underlying SplayTree for inspecting node weights and structure
      */
Sources/Document/CRDT/CRDTText.swift (1)

316-326: Consider adding documentation about return value usage.

While the methods are marked as "for debugging", it would be helpful to add documentation about:

  1. What these tree structures represent
  2. How to interpret the returned trees during debugging
  3. Common debugging scenarios where these methods are useful

This would help other developers effectively use these methods for troubleshooting GC-related issues.

Example documentation:

 /**
- * `getTreeByIndex` returns the tree by index for debugging.
+ * `getTreeByIndex` returns the underlying SplayTree structure indexed by position.
+ * 
+ * This method is useful for debugging scenarios such as:
+ * - Verifying tree balance after GC operations
+ * - Inspecting node positions and their relationships
+ * - Analyzing text fragment distribution
  */
 /**
- * `getTreeByID` returns the tree by ID for debugging.
+ * `getTreeByID` returns the underlying LLRBTree structure indexed by node IDs.
+ * 
+ * This method is useful for debugging scenarios such as:
+ * - Tracking specific nodes during GC operations
+ * - Verifying node removal from indexes
+ * - Analyzing tree structure integrity
  */
Tests/Integration/TextIntegrationTests.swift (1)

241-242: LGTM! The architectural change improves API clarity.

The change from direct checkWeight() to getTreeByIndex()?.checkWeight() better reflects the underlying data structure and improves encapsulation.

Consider adding a comment to clarify that this test specifically verifies node weight consistency during garbage collection:

+ // Verify that node weights remain consistent after concurrent modifications and garbage collection
 let d1Check = await(d1.getRoot().k1 as? JSONText)?.getTreeByIndex()?.checkWeight() ?? false
 let d2Check = await(d2.getRoot().k1 as? JSONText)?.getTreeByIndex()?.checkWeight() ?? false
Tests/Unit/Document/DocumentTests.swift (1)

1059-1083: Test structure looks good, but could benefit from additional assertions.

The test effectively verifies the garbage collection behavior for JSONText nodes, but could be enhanced for better clarity and coverage.

Consider these improvements:

 func test_should_purge_node_from_indexes_during_GC() async throws {
     let doc = Document(key: "test-doc")
 
     try await doc.update { root, _ in
         root.k1 = JSONText()
     }
     var size = await(doc.getRoot().k1 as? JSONText)?.getTreeByID()?.size
     XCTAssertEqual(size, 1)
 
     try await doc.update { root, _ in
         (root.k1 as? JSONText)?.edit(0, 0, "ABC")
     }
     size = await(doc.getRoot().k1 as? JSONText)?.getTreeByID()?.size
     XCTAssertEqual(size, 2)
 
     try await doc.update { root, _ in
         (root.k1 as? JSONText)?.edit(1, 3, "")
     }
     size = await(doc.getRoot().k1 as? JSONText)?.getTreeByID()?.size
     XCTAssertEqual(size, 3)
 
     await doc.garbageCollect(TimeTicket.max)
     size = await(doc.getRoot().k1 as? JSONText)?.getTreeByID()?.size
     XCTAssertEqual(size, 2)
+    
+    // Verify the content is still correct after GC
+    let content = await(doc.getRoot().k1 as? JSONText)?.toString
+    XCTAssertEqual(content, "A", "Content should be 'A' after deleting 'BC'")
+    
+    // Verify we can still edit the text after GC
+    try await doc.update { root, _ in
+        (root.k1 as? JSONText)?.edit(1, 1, "Z")
+    }
+    let finalContent = await(doc.getRoot().k1 as? JSONText)?.toString
+    XCTAssertEqual(finalContent, "AZ", "Should be able to append after GC")
 }

The additional assertions would:

  1. Verify the text content is correct after GC
  2. Ensure the text remains editable after GC
  3. Document the expected behavior through assertion messages
📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between 13ac1a5 and 8a926d4.

📒 Files selected for processing (5)
  • Sources/Document/CRDT/CRDTText.swift (1 hunks)
  • Sources/Document/CRDT/RGATreeSplit.swift (2 hunks)
  • Sources/Document/Json/JSONText.swift (1 hunks)
  • Tests/Integration/TextIntegrationTests.swift (1 hunks)
  • Tests/Unit/Document/DocumentTests.swift (1 hunks)
🔇 Additional comments (4)
Sources/Document/CRDT/CRDTText.swift (1)

316-326: LGTM! The changes align well with GC requirements.

The new debugging methods complement the existing GC functionality by providing tools to verify node removal from indexes. The implementation maintains CRDT properties and integrates well with the existing codebase.

Let's verify the GC-related changes:

✅ Verification successful

Based on the shell script results, I can now generate the final response:

The debugging methods are well-integrated with the GC implementation

The codebase shows a consistent implementation of GC-related functionality:

  • getTreeByIndex and getTreeByID methods are consistently implemented across CRDTText, RGATreeSplit, and JSONText
  • These methods complement the existing GC functionality:
    • getGCPairs() collects nodes marked for removal (removedAt != nil)
    • purge() physically removes nodes from indexes
    • Integration with CRDTRoot.garbageCollect() for coordinated GC operations
🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify GC-related implementations across the codebase

# Test 1: Check for consistent implementation of debugging methods
echo "Checking for consistent debugging method implementations..."
rg -l "func getTreeByIndex|func getTreeByID" 

# Test 2: Verify GC-related method implementations
echo "Checking GC-related implementations..."
rg "getGCPairs|removedAt|purge"

Length of output: 25366

Sources/Document/CRDT/RGATreeSplit.swift (2)

538-548: LGTM! New debugging methods enhance observability.

The addition of getTreeByIndex() and getTreeByID() methods provides better debugging capabilities, replacing the previous checkWeight() method with more granular access to internal structures.


858-859: Verify complete node removal during garbage collection.

The changes correctly remove nodes from both index trees during GC. This is essential to prevent memory leaks and maintain consistency.

Let's verify that nodes are properly removed from all tracking structures:

✅ Verification successful

Based on the shell script results, I can now generate the final response:

Node removal during garbage collection is properly implemented

The purge implementation in RGATreeSplit.swift correctly handles all node cleanup:

  • Removes from both index structures (treeByIndex and treeByID)
  • Properly nullifies all node references (prev/next and insPrev/insNext)
  • No other index structures exist that would require cleanup
🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Search for any other potential index structures or node tracking mechanisms
# that might need cleanup during purge

# Look for tree/index related field declarations
rg -A 2 "private\s+var\s+tree|private\s+var\s+index" 

# Look for other purge implementations that might need similar updates
ast-grep --pattern 'func purge($$$) {
  $$$
}'

Length of output: 7114

Tests/Unit/Document/DocumentTests.swift (1)

1059-1083: Verify coverage of GC behavior across different data types.

The test covers GC behavior for JSONText, but we should verify similar tests exist for other data types.

✅ Verification successful

GC behavior is comprehensively tested across data types and scenarios

The codebase already has extensive GC testing coverage:

  • Unit tests in GCTests.swift cover GC for:
    • Text nodes with and without attributes
    • Arrays and nested objects
    • Tree nodes and container types
  • Integration tests in GCIntegrationTests.swift verify GC behavior for:
    • Multi-client scenarios
    • Container types
    • Text types with complex operations
    • Detached documents

The test under review complements the existing test suite by specifically focusing on node purging from indexes during GC, which wasn't explicitly covered in other tests.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Check for other GC-related tests across the test suite

# Test: Search for GC-related test methods
rg -l 'test.*GC|garbageCollect' 'Tests/'

# Test: Search for JSONText-related tests
rg -l 'JSONText.*test|test.*JSONText' 'Tests/'

Length of output: 294


Script:

#!/bin/bash
# Let's examine the content of GC-related test files to understand the coverage

# Check GCTests.swift content
echo "=== GCTests.swift ==="
rg "func test" Tests/Unit/Document/GCTests.swift -A 5

# Check GCIntegrationTests.swift content
echo -e "\n=== GCIntegrationTests.swift ==="
rg "func test" Tests/Integration/GCIntegrationTests.swift -A 5

# Check CRDTRootTests.swift for GC-related tests
echo -e "\n=== CRDTRootTests.swift GC tests ==="
rg "func test.*GC" Tests/Unit/Document/CRDT/CRDTRootTests.swift -A 5

# Let's also check what data types are being tested with GC
echo -e "\n=== Data types in GC tests ==="
rg "JSONArray|JSONObject|JSONText|JSONCounter|JSONPrimitive" Tests/Unit/Document/GCTests.swift Tests/Integration/GCIntegrationTests.swift

Length of output: 10603

Comment on lines +250 to +260
* `getTreeByIndex` returns the tree by index for debugging.
*/
func getTreeByIndex() -> SplayTree<CRDTTextValue>? {
return self.text?.getTreeByIndex()
}

/**
* `getTreeByID` returns the tree by ID for debugging.
*/
public func checkWeight() -> Bool {
self.text?.checkWeight() ?? false
func getTreeByID() -> LLRBTree<RGATreeSplitNodeID, RGATreeSplitNode<CRDTTextValue>>? {
return self.text?.getTreeByID()
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💡 Codebase verification

Test coverage is adequate, but checkWeight method still exists

The new debugging methods getTreeByIndex and getTreeByID are well tested in DocumentTests.swift, particularly in garbage collection scenarios. However, I notice that:

  • getTreeByID is used to verify tree size after various operations including garbage collection
  • checkWeight method still exists in SplayTree.swift and is being used in integration tests
  • Both debugging methods coexist, which contradicts the summary about checkWeight being replaced

This suggests the PR summary might be incorrect about the removal of checkWeight.

🔗 Analysis chain

Verify test coverage for the new debugging methods.

Let's ensure the new debugging methods are properly covered by tests, especially in garbage collection scenarios.


Let's examine the actual test implementations and the remaining checkWeight usage to make a more informed decision about the test coverage.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Search for test files that might use these new debugging methods
rg -l "getTreeByIndex|getTreeByID" --type swift "Tests/"

# Look for any remaining uses of the old checkWeight method
rg -l "checkWeight" --type swift

Length of output: 248


Script:

#!/bin/bash
# Check the actual test coverage for these methods
rg "getTreeByIndex|getTreeByID" -B 2 -A 2 Tests/Integration/TextIntegrationTests.swift Tests/Unit/Document/DocumentTests.swift

# Check the remaining checkWeight implementation and its usage
rg "checkWeight" -B 2 -A 2 Tests/Integration/TextIntegrationTests.swift Sources/Util/SplayTree.swift

Length of output: 3295

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