Oxdoc 1.2beta

Last update: August 2023.

oxdoc is a tool for generating API documentation in HTML format from comments in Ox source code, inspired by Sun Microsystems' Javadoc. Ox is an object-oriented statistical matrix programming language. Features:

• Formatted comments for classes, members, and global functions.
• Cross-referencing.
• Beautiful rendering of LaTeX formulas (through Mathjax).

Examples of generated documentation:

• PcLiRE.
• Niqlow by Christopher Ferrall.

Getting started:

• Manual
• Example code

Installation instructions (binaries)

The latest compiled version is available at https://github.com/yozw/oxdoc/releases.

Windows

• Unzip the binary zip file
• Use oxdoc.bat to run oxdoc
• You may want to copy oxdoc.bat to a directory in your path, e.g. c:\windows\system32. In that case, copy oxdoc.jar to the same directory.

Linux/OS X

• Unzip the binary zip file
• Activate execute permission for the oxdoc script in the bin/ directory
• Edit bin/oxdoc.xml
• Run bin/oxdoc
• Alternatively, you can place oxdoc and oxdoc.jar in a directory in your path, e.g. ~/bin or /usr/local/bin

Compilation instructions

• Install ant; see https://ant.apache.org/.
• Run ant build to build Oxdoc.
• Run ant dist -- this will make zip files containing source and binary distributions in the dist/ subdirectory

Frequently Asked Questions

Oxdoc freezes while running LaTeX

This happens sometimes when dvipng is run for the first time on files. In Windows, just use Ctrl+C to interrupt the program and run oxdoc again. Usually, the problem then disappears.

Formulas are not visible

This problem happens in Internet Explorer when you use transparent PNG files. The image files created by oxdoc are semi-transparent PNG (Portable Network Graphics) files, and Internet Explorer does not support these files. I recommend using Firefox instead.

When parsing a line that contains two tranpose (') characters, oxdoc stops with an error message

Oxdoc stops with an error message when compiling Ox code that contains a line that contains two transpose (') characters with exactly one character in between. Consider for example the following code:

mx = mx - meanc(mx')'

In this code, oxdoc erroneously recognizes the right parenthesis enclosed in two single quotes ')' as a character constant and produces the following error message:

ParseException: Encountered " <IDENTIFIER> "pc1 "" at line 112, column 1.
Was expecting one of:
"decl" ...
"static" ...
"const" ...
"class" ...
"extern" ...
"enum" ...
"struct" ...
"static" ...
"extern" ...
"static" ...

The problem is caused by the fact that the ox language 'overloads' the single quote character. In ox, it has two meanings: either it is the beginning of a character constant (e.g. 'x' or '\n' -- see also character constants in the Ox language manual), or it means taking the transpose of a vector.

Workaround

Although I have not been able to fix this issue completely, there is a simple workaround for the issue: adding an extra space will prevent oxdoc from making a wrong judgment. (Remark: you need oxdoc version 0.991alpha or higher for this to work.) So, replacing the code above by the following circumvents the problem:

mx = mx - meanc(mx' )'

Notice the extra space after the first single quote. Also note that, in this particular example, perhaps an even better solution is to write:

mx = mx - meanr(mx)

Version history

August 2023 (oxdoc 1.2)

• This release aims to support new features in Ox 8 and Ox 9.
• Added support for ...varname variable-length arguments.
• Added support for multiple variable declarations, e.g. decl [a, b] = {1, 2}.
• Allow in as a variable name.
• Added support for multiplicative matrix declaration, e.g. enum{Vleng=3}; static decl zerovector = < [Vleng] *0>;
• Added support for "raw string literals", i.e., multi-line strings surrounded by backtics.
• Added support for .last indexing in arrays.
• Added support for setting matrix dimensions in declaration, e.g., decl x[3][3] = 1.5.
• Added support for decl statement in if statement.
• Added support for parallel if.
• Added support for .Null.
• Errors in oxdoc.xml are no longer silently ignored.
• It is now possible to inject custom JavaScript by using the -javascript command line / configuration option.
• Bugfix: sort keys were ignored.
• Upgraded to MathJax 3.

June 2017 (oxdoc 1.1)

• Updated foreach to allow for more complicated expressions
• Added parallel for and serial
• Updated case statement to allow for characters and strings

March 4th, 2014

• Did a lot of refactoring and performance optimizations
• Oxdoc now automatically reads the ".oxdoc" file before processing ".ox" (if it exists). Note that this happens only for main ".ox" files, and not for files that are included using the #include directive.
• Added an argument -csspath to specify where to find/write the css files.

February 23rd, 2014

• Migrated to github
• Added a few unit tests
• Added support for new Ox 7 features: lambda expressions, the foreach keyword, and default function argument values.
• Did some major refactoring and code cleaning
• Code now uses generics, so Java 5.0 or higher is required.

April 4th, 2012

• Removed setup utility: not really necessary anymore because Mathjax is default, and latex and dvipdfm are found on search path
• Refactored HTML output refactoring
• Added global variable support
• Enumeration elements are now in the index
• Removed AsciiMathML support
• Fixed GUI
• Beautified java code

March 23rd, 2012

• Fixed the enumeration declaration problem (enum { N=1, M =N+1} is now parsed properly)
• Completed support for enumerations. Enumerations have no name in Ox, so they are automatically called "Anonymous enumeration #1", etc. To suppress this behavior, you can add an oxdoc comment before any enumeration, and use the @name tag to give it a proper name. For example:

   /** Enumeration for feasilbility. 
       @name Feasibility **/
  enum { FEASIBLE, INFEASIBLE }

The usual other @ tags should work as well.

• Implemented indexing as per Chris Ferrall's suggestion: any overridden methods are placed on the same line.
• Added document to the output: the hierarchy tree. Notice that you need to update your oxdoc.css to get this to work
• Changed the default oxdoc.css so that the output looks a bit prettier. At the same time, the HTML output is slightly different. The icons and texts in H1, H2, H3 headers are now inside SPANs.
• Implemented math display through Mathjax, as per suggestion of Michael Massman (see http://www.mathjax.org/). Mathjax is superior to LaTeX image generation, but it requires an internet connection. Since everybody these days has an internet connection, this now the default behavior. You can still use LaTeX to generate formulas by specifying the option "-formulas latex".
• Implemented automatic writing of auxiliary icons (for e.g. the tree, but also for prettier output). If required icon files are not available, they are written. They are never overwritten though. Icons are also on by default now. This can be disable by specifying -noicons
• Added an option -uplevel to enable the "up level" link.
• Implemented a @sortkey tag in all places. Every object has a sort key, which by default is the name of object (e.g. function name or class name), but which can be overridden by the @sortkey tag. Objects are sorted according to their @sortkeys. In particular, this works for files, as you requested.
• The index now distinguishes between constructors, destructors, and methods.
• Default settings for Latex/dvipng executables now depend on the operating system.
• The #import command now includes appropriate header file
• The following code is no longer rejected: [ a[1], a[2] ] = ...
• Members are now listed in documentation too
• Ordering of private/protected/public in class definition is not fixed anymore
• Ordering of cases in switch should not be fixed (default comes last now)
• Add option to list members/methods as internal using @internal
• Member modifiers (e.g. static functions/fields, const fields) are documented as well now
• Icons are now of the icon class in the output HTML
• Latex formulas are now of the latex class in the output HTML
• Improved css files / added Chris Ferrall's css file
• Added goto statement / labels to Ox syntax
• Added option for specifying include path
• Added icon for fields / enumerations
• In PcLire, Lire_Object and Lire_SimsSolver have no icon in the index (fixed)

License

The MIT License (MIT)

Copyright (c) 2005-2023 Y. Zwols

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.