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BUG: fix ds.all_data() for spherical AMReX datasets #8374

BUG: fix ds.all_data() for spherical AMReX datasets

BUG: fix ds.all_data() for spherical AMReX datasets #8374

Workflow file for this run

name: Build and Test
on:
push:
branches:
- main
pull_request:
workflow_dispatch:
defaults:
run:
shell: bash
env:
HOMEBREW_NO_AUTO_UPDATE: 1
jobs:
build:
name: "${{ matrix.tests-type }} tests: py${{ matrix.python-version }} on ${{ matrix.os }} (${{ matrix.test-runner }})"
strategy:
# run all tests even if e.g. image tests fail early
fail-fast: false
matrix:
os:
- ubuntu-latest
- macos-latest
python-version: ['3.12']
dependencies: [full]
tests-type: [unit]
test-runner: [pytest]
venv-loc: [bin]
include:
- os: windows-latest
python-version: '3.12'
dependencies: full
tests-type: unit
test-runner: pytest
venv-loc: Scripts
- os: ubuntu-20.04
python-version: '3.10.3'
dependencies: minimal
tests-type: unit
test-runner: pytest
venv-loc: bin
- os: ubuntu-latest
# this job is necessary for non-answer, 'yield' based tests
# because pytest doesn't support such tests
python-version: '3.10'
dependencies: full
tests-type: unit
test-runner: nose
venv-loc: bin
- os: ubuntu-latest
# answer tests use 'yield', so they require nose
# they are also attached to a specific, occasionally updated, Python version
# but it does *not* have to match the current minimal supported version
python-version: '3.10'
dependencies: full
tests-type: answer
test-runner: nose
venv-loc: bin
- os: ubuntu-latest
# minimal tests with latest Python and no optional dependencies
python-version: '3.x'
dependencies: ''
tests-type: unit
test-runner: pytest
venv-loc: bin
runs-on: ${{ matrix.os }}
concurrency:
# auto-cancel any in-progress job *on the same branch*
group: ${{ github.workflow }}-${{ github.ref }}-${{ matrix.tests-type }}-py${{ matrix.python-version }}-${{ matrix.os }}-${{ matrix.test-runner }}
cancel-in-progress: true
steps:
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Checkout repo (bare)
if: matrix.tests-type != 'answer'
uses: actions/checkout@v4
- name: Checkout repo (with submodules)
if: matrix.tests-type == 'answer'
uses: actions/checkout@v4
with:
submodules: true
- name: Install dependencies and yt
shell: bash
env:
dependencies: ${{ matrix.dependencies }}
run: |
python -m venv .venv
source .venv/${{matrix.venv-loc}}/activate
source ./tests/ci_install.sh
- name: Install and patch nosetest
if: matrix.test-runner == 'nose'
run: |
source .venv/${{matrix.venv-loc}}/activate
python -m pip install -r nose_requirements.txt
find .venv/lib/python${{matrix.python-version}}/site-packages/nose -name '*.py' \
-exec sed -i -e s/collections.Callable/collections.abc.Callable/g '{}' ';'
- name: Show final env
run: |
source .venv/${{matrix.venv-loc}}/activate
python -m pip list
- name: Run Unit Tests (pytest)
if: matrix.test-runner == 'pytest'
run: |
source .venv/${{matrix.venv-loc}}/activate
pytest --color=yes
- name: Run Tests (nose)
if: matrix.test-runner == 'nose'
run: |
source .venv/${{matrix.venv-loc}}/activate
cat nose_ignores.txt | xargs python -m nose -c nose_unit.cfg --traverse-namespace
image-tests:
name: Image tests
runs-on: ubuntu-latest
concurrency:
# auto-cancel any in-progress job *on the same branch*
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
steps:
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: '3.11'
- name: Checkout repo (with submodules)
uses: actions/checkout@v4
with:
submodules: true
- name: Install dependencies and yt
shell: bash
env:
dependencies: 'cartopy'
run: |
source ./tests/ci_install.sh
- run: python -m pip list
- name: Run Image Tests
run: |
pytest --color=yes --mpl -m mpl_image_compare \
--mpl-generate-summary=html \
--mpl-results-path=pytest_mpl_results \
--mpl-baseline-path=tests/pytest_mpl_baseline \
-rxXs # show extra info on xfailed, xpassed, and skipped tests
- name: Generate new image baseline
if: failure()
run: |
pytest --color=yes --mpl -m mpl_image_compare \
--mpl-generate-path=pytest_mpl_new_baseline \
--last-failed
# always attempt to upload artifacts, even
# (and especially) in case of failure.
- name: Upload pytest-mpl report
if: always()
uses: actions/upload-artifact@v4
with:
name: yt_pytest_mpl_results
path: pytest_mpl_results/*
- name: Upload pytest-mpl baseline
if: always()
uses: actions/upload-artifact@v4
with:
name: yt_pytest_mpl_new_baseline
path: pytest_mpl_new_baseline/*
if-no-files-found: ignore