Initial commit of the SMART on FHIR tutorial in it's final repository…

… location.

This tutorial leverages the open source Slate project. It was originally
written by @parthivbhagat with input from @mjhenkes, @kolkheang, and @kpshek.

.gitignore

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+*.gem
+*.rbc
+.bundle
+.config
+coverage
+InstalledFiles
+lib/bundler/man
+pkg
+rdoc
+spec/reports
+test/tmp
+test/version_tmp
+tmp
+*.DS_STORE
+build/
+.cache
+.vagrant
+.sass-cache
+
+# YARD artifacts
+.yardoc
+_yardoc
+doc/
+.idea/

.travis.yml

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+sudo: false
+
+language: ruby
+
+rvm:
+  - 2.0.0
+  - 2.1.0
+
+cache: bundler
+script: bundle exec middleman build

CHANGELOG.md

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+# Changelog
+
+## Version 1.3.3
+
+*June 11, 2016*
+
+Documentation and example changes.
+
+## Version 1.3.2
+
+*February 3, 2016*
+
+A small bugfix for slightly incorrect background colors on code samples in some cases.
+
+## Version 1.3.1
+
+*January 31, 2016*
+
+A small bugfix for incorrect whitespace in code blocks.
+
+## Version 1.3
+
+*January 27, 2016*
+
+We've upgraded Middleman and a number of other dependencies, which should fix quite a few bugs.
+
+Instead of `rake build` and `rake deploy`, you should now run `bundle exec middleman build --clean` to build your server, and `./deploy.sh` to deploy it to Github Pages.
+
+## Version 1.2
+
+*June 20, 2015*
+
+**Fixes:**
+
+- Remove crash on invalid languages
+- Update Tocify to scroll to the highlighted header in the Table of Contents
+- Fix variable leak and update search algorithms
+- Update Python examples to be valid Python
+- Update gems
+- More misc. bugfixes of Javascript errors
+- Add Dockerfile
+- Remove unused gems
+- Optimize images, fonts, and generated asset files
+- Add chinese font support
+- Remove RedCarpet header ID patch
+- Update language tabs to not disturb existing query strings
+
+## Version 1.1
+
+*July 27, 2014*
+
+**Fixes:**
+
+- Finally, a fix for the redcarpet upgrade bug
+
+## Version 1.0
+
+*July 2, 2014*
+
+[View Issues](https://github.com/tripit/slate/issues?milestone=1&state=closed)
+
+**Features:**
+
+- Responsive designs for phones and tablets
+- Started tagging versions
+
+**Fixes:**
+
+- Fixed 'unrecognized expression' error
+- Fixed #undefined hash bug
+- Fixed bug where the current language tab would be unselected
+- Fixed bug where tocify wouldn't highlight the current section while searching
+- Fixed bug where ids of header tags would have special characters that caused problems
+- Updated layout so that pages with disabled search wouldn't load search.js
+- Cleaned up Javascript

Gemfile

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+source 'https://rubygems.org'
+
+# Middleman
+gem 'middleman', '~>4.0.0'
+gem 'middleman-gh-pages', '~> 0.0.3'
+gem 'middleman-syntax', '~> 2.1.0'
+gem 'middleman-autoprefixer', '~> 2.7.0'
+gem "middleman-sprockets", "~> 4.0.0.rc"
+gem 'rouge', '~> 1.10.1'
+gem 'redcarpet', '~> 3.3.2'

Gemfile.lock

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+GEM
+  remote: https://rubygems.org/
+  specs:
+    activesupport (4.2.5.1)
+      i18n (~> 0.7)
+      json (~> 1.7, >= 1.7.7)
+      minitest (~> 5.1)
+      thread_safe (~> 0.3, >= 0.3.4)
+      tzinfo (~> 1.1)
+    addressable (2.4.0)
+    autoprefixer-rails (6.3.1)
+      execjs
+      json
+    backports (3.6.7)
+    capybara (2.5.0)
+      mime-types (>= 1.16)
+      nokogiri (>= 1.3.3)
+      rack (>= 1.0.0)
+      rack-test (>= 0.5.4)
+      xpath (~> 2.0)
+    coffee-script (2.4.1)
+      coffee-script-source
+      execjs
+    coffee-script-source (1.10.0)
+    compass-import-once (1.0.5)
+      sass (>= 3.2, < 3.5)
+    concurrent-ruby (0.9.2)
+    contracts (0.12.0)
+    erubis (2.7.0)
+    execjs (2.6.0)
+    fastimage (1.8.1)
+      addressable (~> 2.3, >= 2.3.5)
+    ffi (1.9.10)
+    ffi (1.9.10-x64-mingw32)
+    haml (4.0.7)
+      tilt
+    hamster (2.0.0)
+      concurrent-ruby (~> 0.8)
+    hashie (3.4.3)
+    i18n (0.7.0)
+    json (1.8.3)
+    kramdown (1.9.0)
+    listen (3.0.5)
+      rb-fsevent (>= 0.9.3)
+      rb-inotify (>= 0.9)
+    middleman (4.0.0)
+      coffee-script (~> 2.2)
+      compass-import-once (= 1.0.5)
+      haml (>= 4.0.5)
+      kramdown (~> 1.2)
+      middleman-cli (= 4.0.0)
+      middleman-core (= 4.0.0)
+      sass (>= 3.4.0, < 4.0)
+    middleman-autoprefixer (2.7.0)
+      autoprefixer-rails (>= 6.3.1, < 7.0.0)
+      middleman-core (>= 3.3.3)
+    middleman-cli (4.0.0)
+      thor (>= 0.17.0, < 2.0)
+    middleman-core (4.0.0)
+      activesupport (~> 4.2)
+      addressable (~> 2.4.0)
+      backports (~> 3.6)
+      bundler (~> 1.1)
+      capybara (~> 2.5.0)
+      contracts (~> 0.12.0)
+      erubis
+      execjs (~> 2.0)
+      fastimage (~> 1.8)
+      hamster (~> 2.0)
+      hashie (~> 3.4)
+      i18n (~> 0.7.0)
+      listen (~> 3.0)
+      padrino-helpers (~> 0.13.0)
+      rack (>= 1.4.5, < 2.0)
+      sass (>= 3.4)
+      tilt (~> 1.4.1)
+      uglifier (~> 2.6)
+    middleman-gh-pages (0.0.3)
+      rake (> 0.9.3)
+    middleman-sprockets (4.0.0.rc.1)
+      middleman-core (>= 4.0.0.rc.1)
+      sprockets (~> 3.0)
+    middleman-syntax (2.1.0)
+      middleman-core (>= 3.2)
+      rouge (~> 1.0)
+    mime-types (3.0)
+      mime-types-data (~> 3.2015)
+    mime-types-data (3.2015.1120)
+    mini_portile2 (2.0.0)
+    minitest (5.8.4)
+    nokogiri (1.6.7.2)
+      mini_portile2 (~> 2.0.0.rc2)
+    nokogiri (1.6.7.2-x64-mingw32)
+      mini_portile2 (~> 2.0.0.rc2)
+    padrino-helpers (0.13.1)
+      i18n (~> 0.6, >= 0.6.7)
+      padrino-support (= 0.13.1)
+      tilt (~> 1.4.1)
+    padrino-support (0.13.1)
+      activesupport (>= 3.1)
+    rack (1.6.4)
+    rack-test (0.6.3)
+      rack (>= 1.0)
+    rake (10.4.2)
+    rb-fsevent (0.9.7)
+    rb-inotify (0.9.5)
+      ffi (>= 0.5.0)
+    redcarpet (3.3.4)
+    rouge (1.10.1)
+    sass (3.4.21)
+    sprockets (3.4.1)
+      rack (> 1, < 3)
+    thor (0.19.1)
+    thread_safe (0.3.5)
+    tilt (1.4.1)
+    tzinfo (1.2.2)
+      thread_safe (~> 0.1)
+    uglifier (2.7.2)
+      execjs (>= 0.3.0)
+      json (>= 1.8.0)
+    xpath (2.0.0)
+      nokogiri (~> 1.3)
+
+PLATFORMS
+  ruby
+  x64-mingw32
+
+DEPENDENCIES
+  middleman (~> 4.0.0)
+  middleman-autoprefixer (~> 2.7.0)
+  middleman-gh-pages (~> 0.0.3)
+  middleman-sprockets (~> 4.0.0.rc)
+  middleman-syntax (~> 2.1.0)
+  redcarpet (~> 3.3.2)
+  rouge (~> 1.10.1)
+
+BUNDLED WITH
+   1.12.5

LICENSE

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+Copyright 2008-2013 Concur Technologies, Inc.
+
+Licensed under the Apache License, Version 2.0 (the "License"); you may
+not use this file except in compliance with the License. You may obtain
+a copy of the License at
+
+   http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
+WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
+License for the specific language governing permissions and limitations
+under the License.

README.md

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+# SMART Tutorial
+
+Run the tutorial here:
+https://cerner.github.io/smart-on-fhir-tutorial
+
+Description
+------------
+The SMART tutorial is intended to help developers quickly create a example smart app, register it with Cerner's code console, and test it against Cerner's sandbox. It is a [Slate](https://github.com/lord/slate) site hosted through GitHub Pages and includes a small example app in the source folder.
+
+Getting Started
+------------------------------
+
+### Prerequisites
+
+You're going to need:
+
+ - Ruby
+
+### Getting Set Up
+
+To run this tutorial locally:
+
+```bash
+$ bundle install
+```
+
+```bash
+$ bundle exec middleman server
+```
+To deploy changes to the gh-pages branch:
+
+```bash
+$ ./deploy.sh
+```

Vagrantfile

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+Vagrant.configure(2) do |config|
+  config.vm.box = "ubuntu/trusty64"
+  config.vm.network :forwarded_port, guest: 4567, host: 4567
+
+  config.vm.provision "bootstrap",
+    type: "shell",
+    inline: <<-SHELL
+      sudo apt-get update
+      sudo apt-get install -yq ruby2.0 ruby2.0-dev pkg-config build-essential nodejs git libxml2-dev libxslt-dev
+      sudo apt-get autoremove -yq
+      gem2.0 install --no-ri --no-rdoc bundler
+    SHELL
+
+  # add the local user git config to the vm
+  config.vm.provision "file", source: "~/.gitconfig", destination: ".gitconfig"
+
+  config.vm.provision "install",
+    type: "shell",
+    privileged: false,
+    inline: <<-SHELL
+      echo "=============================================="
+      echo "Installing app dependencies"
+      cd /vagrant
+      bundle config build.nokogiri --use-system-libraries
+      bundle install
+    SHELL
+
+  config.vm.provision "run",
+    type: "shell",
+    privileged: false,
+    run: "always",
+    inline: <<-SHELL
+      echo "=============================================="
+      echo "Starting up middleman at http://localhost:4567"
+      echo "If it does not come up, check the ~/middleman.log file for any error messages"
+      cd /vagrant
+      bundle exec middleman server --force-polling -l 1 &> ~/middleman.log &
+    SHELL
+end

config.rb

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+# Markdown
+set :markdown_engine, :redcarpet
+set :markdown,
+    fenced_code_blocks: true,
+    smartypants: true,
+    disable_indented_code_blocks: true,
+    prettify: true,
+    tables: true,
+    with_toc_data: true,
+    no_intra_emphasis: true
+
+# Assets
+set :css_dir, 'stylesheets'
+set :js_dir, 'javascripts'
+set :images_dir, 'images'
+set :fonts_dir, 'fonts'
+
+# Activate the syntax highlighter
+activate :syntax
+
+activate :autoprefixer do |config|
+  config.browsers = ['last 2 version', 'Firefox ESR']
+  config.cascade  = false
+  config.inline   = true
+end
+
+# Github pages require relative links
+activate :relative_assets
+set :relative_links, true
+
+# Build Configuration
+configure :build do
+  # If you're having trouble with Middleman hanging, commenting
+  # out the following two lines has been known to help
+  # activate :minify_css
+  # activate :minify_javascript
+  # activate :relative_assets
+  # activate :asset_hash
+  # activate :gzip
+end
+
+# Deploy Configuration
+# If you want Middleman to listen on a different port, you can set that below
+set :port, 4567