Update README.md

yuriyzubov · Jan 17, 2025 · 160b769 · 160b769
1 parent 82bf1a9
commit 160b769
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/README.md b/README.md
@@ -4,8 +4,8 @@ This script could be used for conversion of a .tiff file to .zarr format with OM
 2. install tif_to_zarr
     ``pip install tiff-to-zarr``
 5. run script using cli:
-    ``tiff-to-zarr --src=PATH_TO_SOURCE_DIRECTORY/input_file.tif --dest=PATH_TO_DEST_DIRECTORY/output_file.zarr --num_workers=20, --cluster=local``
+    ``tiff-to-zarr --src=PATH_TO_SOURCE_DIRECTORY/input_file.tif((or 3D stack)) --dest=PATH_TO_DEST_DIRECTORY/output_file.zarr --num_workers=20 --cluster=local``
 6. to convert a tiff file to zarr with custom metadata values, you can run smthg similar to this:
-``tiff-to-zarr --src=path_to_source_tif(3d or stack)  --dest=path_to_output_zarr --num_workers=20 --cluster=local(or lsf) --zarr_chunks 13 128 128 --axes x z y --scale 4.0 5.0 6.0 --translation 1.0 2.0 3.0 --units nanometer nanometer nanometer``
+``tiff-to-zarr --src=path_to_source_tif(or 3D stack)  --dest=path_to_output_zarr --num_workers=20 --cluster=local(or lsf) --zarr_chunks 13 128 128 --axes x z y --scale 4.0 5.0 6.0 --translation 1.0 2.0 3.0 --units nanometer nanometer nanometer``
 7. To get the list of options, you may run this:
 ``tiff-to-zarr --help``