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use versioned cl ont file
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allyhawkins committed Jan 7, 2025
1 parent a6d13f7 commit 15c23b8
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Expand Up @@ -16,7 +16,7 @@ consensus_ref_file <- file.path(module_base, "references", "consensus-cell-type-
# Prep references --------------------------------------------------

# grab obo file
cl_ont <- ontologyIndex::get_ontology("http://purl.obolibrary.org/obo/cl-basic.obo")
cl_ont <- ontologyIndex::get_ontology("http://purl.obolibrary.org/obo/cl/releases/2024-09-26/cl-basic.obo")

# set up the graph to use for assigning LCA terms
parent_terms <- cl_ont$parents
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