Skip to content

Issues: AlexsLemonade/OpenScPCA-analysis

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

36 Open 389 Closed
36 Open 389 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Add Bluesky to OpenScPCA website
#986 opened Jan 14, 2025 by Jen-OMalley
@Jen-OMalley
Script to run AUCell on all marker gene sets in Ewings module analysis
#985 opened Jan 14, 2025 by allyhawkins
@allyhawkins
Identify appropriate max rank to use for AUCell with Ewing samples analysis
#984 opened Jan 14, 2025 by allyhawkins
1
@allyhawkins
Run the script to generate consensus cell types in ScPCA samples and save the output analysis
#980 opened Jan 9, 2025 by allyhawkins
@allyhawkins
1
Bug report: Zellkonverter/Basilisk initialization in Docker images doesn't work with rstudio users bug Something isn't working
#972 opened Jan 3, 2025 by jashapiro
Summarize findings from consensus labels analysis
#970 opened Jan 2, 2025 by allyhawkins
@allyhawkins
Analysis module failing in CI ci OpenScPCA admin Issue for an OpenScPCA maintainer
#967 opened Dec 22, 2024 by github-actions bot
1
Consider using a converted Seurat object in hello-clusters
#957 opened Dec 20, 2024 by sjspielman
@sjspielman
1
Docs request: "Quick start" guide for technical setup
#948 opened Dec 17, 2024 by sjspielman
1
Notebook to explore using normal cell references to annotate tumor cell states in Ewing sarcoma samples analysis
#941 opened Dec 13, 2024 by allyhawkins
@allyhawkins
Analysis module failing in CI ci OpenScPCA admin Issue for an OpenScPCA maintainer
#929 opened Dec 4, 2024 by github-actions bot
1
Decrease size of docker image for Ewing's module
#884 opened Nov 15, 2024 by allyhawkins
@allyhawkins
4
Integration of the SCPCP000006 Wilms tumor dataset analysis
#857 opened Nov 5, 2024 by maud-p
3 tasks
6
Improve Wilms Tumor Dataset Annotation (SCPCP000006) - explore predicted.score and has_cnv.score thresholds analysis
#856 opened Nov 5, 2024 by maud-p
3 tasks
5
Modify/explore clustering for Wilms tumor annotation (SCPCP000014) analysis
#840 opened Oct 24, 2024 by JingxuanChen7
Docs request: FAQ about gene id conversion
#837 opened Oct 22, 2024 by jashapiro
1
cell type/tumor annotation for ETP T-ALL (SCPCP000003) analysis
#822 opened Oct 16, 2024 by UTSouthwesternDSSR
Attempt to identify tumor cells in those non-ETP samples without B cells (SCPCP000003) analysis
#811 opened Oct 15, 2024 by UTSouthwesternDSSR
Keep tabs on Rhtslib installation in Dockerfiles OpenScPCA admin Issue for an OpenScPCA maintainer
#803 opened Oct 8, 2024 by sjspielman
Add docs about rOpenScPCA and hello-clusters
#799 opened Oct 7, 2024 by sjspielman
1
@sjspielman
1
celltype/tumor annotation for non-ETP T-ALL (SCPCP000003) analysis
#787 opened Oct 1, 2024 by UTSouthwesternDSSR
Initiation of SCPCP000001 analysis
#778 opened Sep 24, 2024 by georginaalbadri
5
Celltype annotation for non-ETP ALL (SCPCP000003) analysis
#761 opened Sep 13, 2024 by UTSouthwesternDSSR
DSRCT Dataset Analysis (SCPCP000013) #583 analysis
#701 opened Aug 7, 2024 by danhtruong
1
Cell Type Annotation of Osteosarcoma snRNA-seq Data (SCPCP000017) analysis
#687 opened Aug 3, 2024 by yutarohtanaka
1
ProTip! Type g i on any issue or pull request to go back to the issue listing page.