Draft of results section for scpca-nf #34
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content/03.results.md
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| - Each process in the workflow is run in a docker container, so users only need to install Nextflow and docker to be able to use this workflow. | ||
| - Nextflow also handles parallelizing processing based on your environment and will configure processing so that run time is minimal. | ||
| All data available on the portal was uniformly processed using `scpca-nf`, an open-source and efficient Nextflow[@url:https://www.nextflow.io/docs/latest/index.html] workflow for quantifying single-cell and single-nuclei RNA-seq data (github.com/alexslemonade/scpca-nf). | ||
| <!-- TO DO: Does description of Nextflow benefits go here or a separate paragraph at the end?--> |
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If you do it this way, it will be consistent with what I added in #46, and it usually makes spellcheck angry, which is helpful because then you know you still have a TODO in there somewhere!
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| <!-- TO DO: Does description of Nextflow benefits go here or a separate paragraph at the end?--> | |
| <!-- TODO: Does description of Nextflow benefits go here or a separate paragraph at the end?--> |
…ults-scpca-nf Add JNT edits to results section on scpca-nf
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@jaclyn-taroni I made edits here to address the comments you left in the TODO comments.
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jaclyn-taroni
approved these changes
Feb 27, 2024
Co-authored-by: Jaclyn Taroni <[email protected]>
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Click the link below to download the manuscript build as a ZIP file. |
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Click the link below to download the manuscript build as a ZIP file. |
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Closes #27
Stacked on #26
This PR adds the section for describing scpca-nf to the results. I mostly followed the outline, but I was struggling a bit with where to include information on why Nextflow is cool. I left both options in the file and indicated them with html comments. I think I like talking about it right up front when we actually mention that the workflow is nextflow-based, but I'm curious what others think.
Also, I think I caught all the places for references, but please let me know if I missed any!