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.vscode
.vscode
 
 
Archive
Archive
 
 
CGAL-5.6
CGAL-5.6
 
 
RAFT-Stereo
RAFT-Stereo
 
 
RAFT
RAFT
 
 
build
build
 
 
chicken_images
chicken_images
 
 
experimentation
experimentation
 
 
extra_images
extra_images
 
 
final_plans
final_plans
 
 
images
images
 
 
masks
masks
 
 
matching test data
matching test data
 
 
old_runs
old_runs
 
 
real_images
real_images
 
 
record
record
 
 
results
results
 
 
s1
s1
 
 
s2
s2
 
 
sam2
sam2
 
 
temp_images
temp_images
 
 
transforms
transforms
 
 
.DS_Store
.DS_Store
 
 
.gitignore
.gitignore
 
 
3d_path_len.png
3d_path_len.png
 
 
3d_path_len_1.png
3d_path_len_1.png
 
 
3d_path_len_2.png
3d_path_len_2.png
 
 
3dpipeline.py
3dpipeline.py
 
 
CMakeLists.txt
CMakeLists.txt
 
 
Constraints.py
Constraints.py
 
 
DistanceCalculator.py
DistanceCalculator.py
 
 
EdgeDetector.py
EdgeDetector.py
 
 
InsertionPointGenerator.py
InsertionPointGenerator.py
 
 
Kimhs_run.py
Kimhs_run.py
 
 
MeshIngestor.py
MeshIngestor.py
 
 
Optimizer3d.py
Optimizer3d.py
 
 
RAFT.ipynb
RAFT.ipynb
 
 
README.md
README.md
 
 
RewardFunction.py
RewardFunction.py
 
 
RewardFunction3D.py
RewardFunction3D.py
 
 
SAM.py
SAM.py
 
 
SAMTest.py
SAMTest.py
 
 
ScaleGenerator.py
ScaleGenerator.py
 
 
Screen Shot 2024-11-29 at 12.11.10 PM.jpeg
Screen Shot 2024-11-29 at 12.11.10 PM.jpeg
 
 
SutureAnalysis.py
SutureAnalysis.py
 
 
SutureDisplayAdjust.py
SutureDisplayAdjust.py
 
 
SutureDisplayAdjust2D.py
SutureDisplayAdjust2D.py
 
 
SuturePlacement3d.py
SuturePlacement3d.py
 
 
SuturePlacer.py
SuturePlacer.py
 
 
adjacency_matrix.txt
adjacency_matrix.txt
 
 
binary_skeleton.npy
binary_skeleton.npy
 
 
clicked_losses.csv
clicked_losses.csv
 
 
clicked_points.txt
clicked_points.txt
 
 
convert_to_xyz.py
convert_to_xyz.py
 
 
createPoints.py
createPoints.py
 
 
dilated_mask.jpg
dilated_mask.jpg
 
 
enhance_image.py
enhance_image.py
 
 
environment.yml
environment.yml
 
 
fillHoles.py
fillHoles.py
 
 
force_model_new.py
force_model_new.py
 
 
generate_mesh
generate_mesh
 
 
generate_mesh.cpp
generate_mesh.cpp
 
 
image_transform.py
image_transform.py
 
 
intersect.py
intersect.py
 
 
largestCC.py
largestCC.py
 
 
line_pts_3d.npy
line_pts_3d.npy
 
 
main.py
main.py
 
 
original_mask.jpg
original_mask.jpg
 
 
out_af.off
out_af.off
 
 
out_sp.off
out_sp.off
 
 
pipeline_xyz_pts.xyz
pipeline_xyz_pts.xyz
 
 
point_ordering.py
point_ordering.py
 
 
requirements.txt
requirements.txt
 
 
roast_chicken.glb
roast_chicken.glb
 
 
root_finder.py
root_finder.py
 
 
scipy_bezier_tutorial.py
scipy_bezier_tutorial.py
 
 
scipy_generate_sample_spline.py
scipy_generate_sample_spline.py
 
 
scratch.py
scratch.py
 
 
spline.png
spline.png
 
 
surrounding_pts.npy
surrounding_pts.npy
 
 
synth_adjacency.txt
synth_adjacency.txt
 
 
synth_coordinates.txt
synth_coordinates.txt
 
 
test_force_model.py
test_force_model.py
 
 
utils.py
utils.py
 
 
vertex_lookup.txt
vertex_lookup.txt
 
 
xyz_pts.xyz
xyz_pts.xyz
 
 

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Suture-Placement

Current running instructions:

python 3dpipeline.py

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