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Neuronunit reduced cells #348

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Neuronunit reduced cells #348

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Commits on Jan 30, 2021

  1. adding in appropriate notebooks, removed call to pebble pool in neuro… 

    …nunit BPO class
    @russelljjarvis
    russelljjarvis committed Jan 30, 2021
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  2. third example

    @russelljjarvis
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  3. adding in single file

    @russelljjarvis
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  4. reverted algorithms file to the original

    @russelljjarvis
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  5. reintroduce constructor BPO_deap_opt() argument/ neuronunit=boolean f… 

    …lag, which went missing at time of pull request
    @russelljjarvis
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Commits on Jan 31, 2021

  1. Update README.md

    @russelljjarvis
    russelljjarvis authored Jan 31, 2021
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  2. Update README.md

    @russelljjarvis
    russelljjarvis authored Jan 31, 2021
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  3. update build instructions pertaining to git to see if using different… 

    … git commands will install the correct code from neuronunit@optimization
    @russelljjarvis
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  4. Merge branch 'neuronunit_reduced_cells' of https://github.com/russell… 

    …jjarvis/BluePyOpt into neuronunit_reduced_cells
    @russelljjarvis
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  5. Updated config.yml

    @russelljjarvis
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  6. converted spaces to tabs

    @russelljjarvis
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  7. converted spaces to tabs

    @russelljjarvis
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  8. converted spaces to tabs

    @russelljjarvis
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  9. shorter build+tests

    @russelljjarvis
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  10. more ci fixing

    @russelljjarvis
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  11. perhaps ci will work with different test dependency

    @russelljjarvis
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  12. added in necessary test

    @russelljjarvis
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Commits on Feb 1, 2021

  1. changed setup.py to try to coax tox to run

    @russelljjarvis
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Commits on Feb 4, 2021

  1. abolished DataTC useful methods persist because of inheritance

    @russelljjarvis
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Commits on Feb 5, 2021

  1. change dependencies to run on tox

    @russelljjarvis
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  2. change dependencies to run on tox

    @russelljjarvis
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  3. process dependency links

    @russelljjarvis
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  4. install requires

    @russelljjarvis
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  5. install requires

    @russelljjarvis
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  6. install requires

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  7. install requires

    @russelljjarvis
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  8. ci dependency change

    @russelljjarvis
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  9. ci setup dependency change

    @russelljjarvis
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Commits on Feb 6, 2021

  1. merge

    @russelljjarvis
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Commits on Feb 13, 2021

  1. factored out dtc and replaced with models

    @russelljjarvis
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Commits on Feb 14, 2021

  1. update requirements

    @russelljjarvis
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  2. update CI

    @russelljjarvis
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  3. update

    @russelljjarvis
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  4. update ci

    @russelljjarvis
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  5. update CI

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  6. update

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  7. try to get tox CI working

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Commits on Feb 18, 2021

  1. update for pull request

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Commits on Feb 22, 2021

  1. Fix py2 testing error due to PR #998 in nrn.

    Jaquier Aurélien Tristan committed Feb 22, 2021
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Commits on Feb 23, 2021

  1. Merge pull request BlueBrain#349 from AurelienJaquier/master 

    Fix py2 testing error due to PR #998 in nrn.
    @wvangeit
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  2. Add feature computation functions to CellEvaluator, ObjectivesCalcula… 

    …tor and Objectives
    Tanguy Damart committed Feb 23, 2021
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  3. Merge branch 'master' into feature_values

    @wvangeit
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  4. Updated documentation to add the README on RTD.

    @alex4200
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  5. Add tests

    Tanguy Damart committed Feb 23, 2021
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  6. Merge branch 'feature_values' of https://github.com/BlueBrain/BluePyOpt… 

    … into feature_values
    Tanguy Damart committed Feb 23, 2021
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Commits on Feb 24, 2021

  1. Merge pull request BlueBrain#350 from BlueBrain/feature_values 

    Add feature computation functions to CellEvaluator, ObjectivesCalculator and Objectives
    @wvangeit
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  2. Fixed the bagde table.

    @alex4200
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  3. Merge branch 'master' into alexdoc

    @wvangeit
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  4. Merge pull request BlueBrain#351 from alex4200/alexdoc 

    Updated documentation to add the README on RTD.
    @wvangeit
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  5. Added config files for RTD

    @alex4200
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  6. Merge branch 'alexdoc' of github.com:alex4200/BluePyOpt into alexdoc

    @alex4200
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  7. Merge branch 'master' into alexdoc

    @wvangeit
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  8. Merge pull request BlueBrain#352 from alex4200/alexdoc 

    Adding RTD configuration files
    @wvangeit
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  9. Commenting out the license text.

    @alex4200
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  10. Merge branch 'alexdoc' of github.com:alex4200/BluePyOpt into alexdoc

    @alex4200
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  11. Fixing image in README: Provide proper path depending where the READM… 

    …E is used
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  12. Merge pull request BlueBrain#353 from alex4200/alexdoc 

    Alexdoc comment out license header in requirements
    @wvangeit
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  13. Fix path in readthedocs yaml

    @wvangeit
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  14. Fixing image location in README

    @wvangeit
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Commits on Mar 8, 2021

  1. update testing

    @russelljjarvis
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Commits on Mar 10, 2021

  1. update

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  2. update

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  3. update

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  4. merge

    @russelljjarvis
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  5. merged with origin master @bbp.bpo, checked nose test compatibility, … 

    …edited setup.py
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  6. moved dependencies into extras_require

    @russelljjarvis
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  7. update for CI unittesting passing

    @russelljjarvis
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  8. local CI verification

    @russelljjarvis
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  9. update

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  10. might work

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Commits on Mar 24, 2021

  1. changed test file names

    @russelljjarvis
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  2. update file names

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  3. before merge master/origin

    @russelljjarvis
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  4. update tox

    @russelljjarvis
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  5. update for PR

    @russelljjarvis
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Commits on Mar 25, 2021

  1. add missing s into https of extra requirement

    @russelljjarvis
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  2. update

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  3. update

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  4. neuronunit opt is pip installable, make numba models pip installable

    @russelljjarvis
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  5. edited CI

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  6. update

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  7. update

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  8. ci test

    @russelljjarvis
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  9. update

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  10. update CI

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Commits on Mar 26, 2021

  1. update CI

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  2. CI update

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  3. CI update

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  4. CI update

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  5. CI update

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  6. update

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  7. turn off allensdk logging

    @russelljjarvis
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  8. update CI

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  9. update

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  10. update CI

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  11. update CI

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  12. update CI

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  13. update CI

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  14. update

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  15. update

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  16. update

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  17. update

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  18. update

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  19. update

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  20. update

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  21. update

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  22. update ci

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  23. update

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  24. blah

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  25. blah

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Commits on Mar 27, 2021

  1. update

    @russelljjarvis
    russelljjarvis committed Mar 27, 2021
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  2. tox might work now

    @russelljjarvis
    russelljjarvis committed Mar 27, 2021
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  3. update

    @russelljjarvis
    russelljjarvis committed Mar 27, 2021
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  4. update

    @russelljjarvis
    russelljjarvis committed Mar 27, 2021
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  5. update

    @russelljjarvis
    russelljjarvis committed Mar 27, 2021
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  6. update CI

    @russelljjarvis
    russelljjarvis committed Mar 27, 2021
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  7. update CI

    @russelljjarvis
    russelljjarvis committed Mar 27, 2021
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  8. try remote machine

    @russelljjarvis
    russelljjarvis committed Mar 27, 2021
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  9. update CI

    @russelljjarvis
    russelljjarvis committed Mar 27, 2021
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  10. update CI

    @russelljjarvis
    russelljjarvis committed Mar 27, 2021
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  11. update 

    tox
    @russelljjarvis
    russelljjarvis committed Mar 27, 2021
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  12. update

    @russelljjarvis
    russelljjarvis committed Mar 27, 2021
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Commits on Mar 28, 2021

  1. update

    @russelljjarvis
    russelljjarvis committed Mar 28, 2021
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  2. update

    @russelljjarvis
    russelljjarvis committed Mar 28, 2021
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Commits on Mar 29, 2021

  1. Update main.yml

    @russelljjarvis
    russelljjarvis authored Mar 29, 2021
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Commits on Apr 1, 2021

  1. wqMerge branch 'neuronunit_reduced_cells' of https://github.com/russe… 

    …lljjarvis/BluePyOpt into neuronunit_reduced_cells
    @russelljjarvis
    russelljjarvis committed Apr 1, 2021
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  2. modified some files with black so that they would pass tox style check

    @russelljjarvis
    russelljjarvis committed Apr 1, 2021
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  3. update for remote

    @russelljjarvis
    russelljjarvis committed Apr 1, 2021
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  4. update

    @russelljjarvis
    russelljjarvis committed Apr 1, 2021
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Commits on Apr 5, 2021

  1. update

    @russelljjarvis
    russelljjarvis committed Apr 5, 2021
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  2. update

    @russelljjarvis
    russelljjarvis committed Apr 5, 2021
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Commits on Apr 13, 2021

  1. fixed tab/space error in bpo

    @russelljjarvis
    russelljjarvis committed Apr 13, 2021
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