replace_axon now allows the axon length and numbr of sections to be set

[Hjorthmedh]

Some of our group members needs the ability to change the length of the axonal initial segment, and the number of sections in it. This pull request adds this ability by introducing axon_stump_length and axon_stump_nsec.

[AurelienJaquier]

Looks good, thanks!

[AurelienJaquier]

It looks like your changes do pass our pycodestyle tests:

  bluepyopt/ephys/morphologies.py:199:80: E501 line too long (82 > 79 characters)
  bluepyopt/ephys/morphologies.py:211:42: E226 missing whitespace around arithmetic operator
  bluepyopt/ephys/morphologies.py:220:59: E226 missing whitespace around arithmetic operator
  bluepyopt/ephys/morphologies.py:222:80: E501 line too long (85 > 79 characters)

Could you fix that so that the tests pass, please?

[Hjorthmedh]

@AurelienJaquier Sure, pushed an update.

[Hjorthmedh]

Reverted part of the code, to retain default behaviour.

[codecov-commenter]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 87.38%. Comparing base (43d63a8) to head (e05291c).
Report is 16 commits behind head on master.

Additional details and impacted files

@@            Coverage Diff             @@
##           master     #496      +/-   ##
==========================================
+ Coverage   87.36%   87.38%   +0.01%     
==========================================
  Files          50       50              
  Lines        4346     4351       +5     
==========================================
+ Hits         3797     3802       +5     
  Misses        549      549              

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[AurelienJaquier]

Thanks @Hjorthmedh for your contribution and your patience

[Hjorthmedh]

@AurelienJaquier Thank you! Have a great weekend!