MARCONI(100) Deployment

List of latest packages deployed

• neurodamus-hippocampus/0.4
• neuron/7.8.0c
• py-neurodamus/1.3.0

Instructions for Using Software Stack

• Run a simulation

#!/bin/bash
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=36
#SBATCH -A pra18_4575_0
#SBATCH --time=00:30:00
#SBATCH -p m100_usr_prod

module purge
module load profile/advanced
module load gnu/8.4.0 cuda/10.1
module load spectrum_mpi/10.3.1--binary boost/1.72.0--spectrum_mpi--10.3.1--binary

# python 3.7.8
export LD_LIBRARY_PATH=/cineca/prod/opt/compilers/python/3.7.8/none/lib:$LD_LIBRARY_PATH

module use /m100_work/Pra18_4575_0/software/07-10-2020/install/modules/tcl/linux-rhel7-power9le
module load neurodamus-hippocampus/0.4

# Run the simulation with (old) neurodamus-hoc
mpirun special -mpi -NFRAME 1000 $HOC_LIBRARY_PATH/init.hoc

# Run the simulation with (new) neurodamus-py instead
module load py-neurodamus
mpirun neurodamus BlueConfig

Running Olfactory Bulb 3D model on GPU with NEURON+CoreNEURON

See README instructions in HumanBrainProject/olfactory-bulb-3d repository.