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untracking data/ folder #296

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untracking data/ folder #296

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arik-shurygin
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@arik-shurygin arik-shurygin commented Nov 14, 2024

This PR does the following things

  • Removes the data/ folder and all its files
  • introduces an examples/data/ folder with a single USA example of all input file formats
  • removes variant data tracking as it is not supported by the base framework
  • moves /config into /examples/config since it makes more sense for it to be there
  • modifies all tests to look in the new examples/data/ directory for integration testing

Pulling this PR should not delete your data/ directory so all your existing files will run just fine, but any tests or files pushed onto git should not reference the data/ folder anymore, except in the context of the /input/data mount onto a docker container.

CLOSES #294
CLOSES #207

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